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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10267 Canola cytosol 62.78 69.5
CDY09924 Canola cytosol 63.35 67.17
Bra015573.1-P Field mustard cytosol 58.81 64.89
CDY06697 Canola cytosol 58.52 64.58
Bra031570.1-P Field mustard cytosol 62.22 63.48
CDY06250 Canola cytosol 60.8 62.03
KRH31112 Soybean cytosol 27.84 41.0
GSMUA_Achr10P... Banana cytosol 38.07 40.61
KRG97773 Soybean cytosol 33.52 39.46
VIT_06s0004g06150.t01 Wine grape cytosol 34.66 38.73
PGSC0003DMT400015573 Potato cytosol 34.66 37.77
Solyc09g082950.1.1 Tomato cytosol 33.81 36.73
Os01t0853800-01 Rice plastid 32.95 35.47
Zm00001d012336_P001 Maize mitochondrion 32.95 35.47
TraesCS3B01G399500.1 Wheat plastid 33.52 32.07
TraesCS3A01G367800.1 Wheat plastid 33.24 31.88
HORVU3Hr1G085130.1 Barley plastid 33.24 31.79
TraesCS3D01G360800.1 Wheat plastid 33.81 31.23
KXG33717 Sorghum mitochondrion 33.52 30.57
AT5G23950.2 Thale cress cytosol 16.76 25.11
Protein Annotations
Gene3D:2.60.40.150MapMan:35.2EntrezGene:837242ProteinID:AAF79559.1ProteinID:AEE28105.1ArrayExpress:AT1G07310
EnsemblPlantsGene:AT1G07310RefSeq:AT1G07310TAIR:AT1G07310RefSeq:AT1G07310-TAIR-GEnsemblPlants:AT1G07310.1TAIR:AT1G07310.1
EMBL:AY054646EMBL:AY081489InterPro:C2_domInterPro:C2_domain_sfGO:GO:0003674GO:GO:0008150
InterPro:IPR000008InterPro:IPR035892RefSeq:NP_563785.1PFAM:PF00168PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195
PO:PO:0025281PFscan:PS50004PANTHER:PTHR32246PANTHER:PTHR32246:SF53UniProt:Q9LNV0SMART:SM00239
SUPFAM:SSF49562UniParc:UPI000009DDD8SEG:seg:::
Description
Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
Coordinates
chr1:-:2247112..2248961
Molecular Weight (calculated)
39015.6 Da
IEP (calculated)
7.803
GRAVY (calculated)
-0.747
Length
352 amino acids
Sequence
(BLAST)
001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.