Factsheet for VIT_06s0004g06150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03420.t01	Wine grape	cytosol	49.84	58.8
GSMUA_Achr10P...	Banana	cytosol	54.92	52.42
Zm00001d012336_P001	Maize	mitochondrion	43.49	41.9
Os01t0853800-01	Rice	plastid	43.17	41.59
HORVU3Hr1G085130.1	Barley	plastid	45.4	38.86
TraesCS3A01G367800.1	Wheat	plastid	45.08	38.69
TraesCS3B01G399500.1	Wheat	plastid	45.08	38.59
CDY10267	Canola	cytosol	37.78	37.42
TraesCS3D01G360800.1	Wheat	plastid	45.08	37.27
Bra015573.1-P	Field mustard	cytosol	37.14	36.68
KXG33717	Sorghum	mitochondrion	44.76	36.53
VIT_16s0050g01310.t01	Wine grape	cytosol	30.79	36.19
CDY09924	Canola	cytosol	38.1	36.14
CDY06697	Canola	cytosol	36.51	36.05
VIT_16s0050g01300.t01	Wine grape	cytosol	30.48	35.82
VIT_16s0050g00850.t01	Wine grape	cytosol	32.06	35.31
AT1G07310.1	Thale cress	cytosol	38.73	34.66
Bra031570.1-P	Field mustard	cytosol	36.19	33.04
CDY06250	Canola	cytosol	35.87	32.75

Protein Annotations

EntrezGene:100260337	wikigene:100260337	Gene3D:2.60.40.150	MapMan:35.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI15995	ProteinID:CBI15995.3	UniProt:D7SK19	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
GO:GO:0004843	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100260337	wikigene:LOC100260337
PFAM:PF00168	PANTHER:PTHR32246	PANTHER:PTHR32246:SF19	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC68699
UniParc:UPI00015C7CDE	ArrayExpress:VIT_06s0004g06150	EnsemblPlantsGene:VIT_06s0004g06150	EnsemblPlants:VIT_06s0004g06150.t01	unigene:Vvi.12253	RefSeq:XP_002280187
RefSeq:XP_002280187.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6948644..6949852

Molecular Weight (calculated)

34777.6 Da

IEP (calculated)

7.743

GRAVY (calculated)

-0.748

Length

315 amino acids

Sequence
(BLAST)

001: MATSRIQPPP PPPQSKLMDL DVTIVSAKHL KNVNWRNGDL KPYAIFWVDP ERRFATKPDD CGSTRPVWNE HFSIPINTPP YDSVFTLEIF HSKPSETPKP
101: LVGVLRFPIK DLVDSDESAN SIRTLELRRP SGRPNGKIRI KLALRERPPP TPDYHIAPQS SYYYSSAPPP PPPARDYRGF SSSPYTTHPP PPAPAPSSAA
201: PYSYGGYSDP YSGYYGYYSQ QPPVPPPRPF FDRPSNYGVP GGPSAPVDYS AYEHKPKGSG KMGLGTGLAV GAVAGALGGL ALEEGIKYEE EKVADRVEND
301: LSARDDYSDY HRSEY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.