Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13033 | Sorghum | mitochondrion | 76.15 | 80.89 |
| Zm00001d001952_P001 | Maize | mitochondrion | 70.5 | 74.56 |
| Os04t0663200-01 | Rice | cytosol | 39.96 | 48.6 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 52.72 | 47.1 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 53.14 | 45.85 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 50.42 | 45.64 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 52.72 | 45.41 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 36.4 | 39.01 |
| HORVU2Hr1G109740.2 | Barley | plastid | 50.21 | 38.84 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 35.77 | 37.42 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 35.98 | 37.15 |
| CDY62587 | Canola | mitochondrion, nucleus | 30.33 | 35.54 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 29.71 | 34.89 |
| CDY39347 | Canola | mitochondrion | 30.54 | 34.68 |
| CDY29391 | Canola | extracellular | 28.87 | 34.41 |
| Bra016491.1-P | Field mustard | nucleus | 28.45 | 34.26 |
| Bra025776.1-P | Field mustard | extracellular | 28.66 | 34.16 |
| CDX83740 | Canola | nucleus | 28.24 | 34.09 |
| KRH61063 | Soybean | nucleus | 30.13 | 33.49 |
| AT1G19860.2 | Thale cress | nucleus | 28.87 | 33.25 |
| Solyc12g089260.1.1 | Tomato | nucleus | 33.47 | 32.79 |
| PGSC0003DMT400075650 | Potato | nucleus | 33.05 | 32.31 |
| Bra012068.1-P | Field mustard | cytosol | 11.09 | 29.44 |
| KRH28783 | Soybean | nucleus | 20.29 | 27.79 |
| Solyc02g084080.1.1 | Tomato | cytosol | 6.69 | 25.81 |
| KRH69800 | Soybean | plastid | 29.08 | 25.05 |
| KRH69802 | Soybean | mitochondrion | 28.66 | 24.08 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 24.69 | 23.94 |
| Solyc02g038790.1.1 | Tomato | cytosol | 9.62 | 22.89 |
| AT5G66270.1 | Thale cress | cytosol | 19.87 | 21.16 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 17.15 | 20.71 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 17.15 | 20.05 |
| AT3G51180.1 | Thale cress | nucleus | 21.76 | 19.96 |
| KRH76672 | Soybean | nucleus | 15.9 | 19.54 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 19.04 | 19.28 |
| CDX73744 | Canola | mitochondrion, nucleus | 20.08 | 19.24 |
| Bra036832.1-P | Field mustard | nucleus | 18.41 | 17.74 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 24.69 | 16.57 |
| Solyc02g084160.1.1 | Tomato | cytosol | 5.44 | 16.35 |
| PGSC0003DMT400009146 | Potato | nucleus | 20.5 | 16.2 |
| Solyc02g084200.1.1 | Tomato | nucleus | 19.87 | 15.99 |
| PGSC0003DMT400092162 | Potato | nucleus | 17.15 | 14.62 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 13.6 | 12.04 |
| Solyc02g084110.1.1 | Tomato | cytosol | 3.56 | 11.18 |
Protein Annotations
| EnsemblPlants:Zm00001d026536_P002 | EnsemblPlants:Zm00001d026536_T002 | EnsemblPlantsGene:Zm00001d026536 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 |
| PFAM:PF00642 | PFscan:PS50103 | ProteinID:AQK46976.1 | SEG:seg | SUPFAM:SSF90229 | UniParc:UPI000842F4B5 |
| UniProt:A0A1D6JH47 | MapMan:15.5.16 | : | : | : | : |
Description
Zinc finger CCCH domain-containing protein 6
Coordinates
chr10:-:147843947..147850295
Molecular Weight (calculated)
52266.4 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.604
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPRRSKRVS WATGANLCKN EKLKYCDGMQ NPSLYGTKQV RFFISEDSPS QAGLRPQDNL QAKGSWLMHA AGPSSDDSLP PGFESLQPTS CLKIDISQIH
101: VIRWRCPPKV LHNPVWLVAA GEESEEVALQ NDRIFGALEA IYPRPSNIPP NPFVTPDVKD SQYDDSRTQL VPLLPVEEDD ASDQLEEPPV GLSSSYQQSD
201: KYDSATFRVP QASDAPFTTA QQQQPNGSIN TTRSGAPVEP DTVAAASAAY TAIIQSNRMG NMIDKDLLVE MLSDPAQLER LMKEYGALKH EQSTNSSVAP
301: MVQGPPPQMT ASVPVSFPDH TTTFHNINST LPPPPVLNRL PPPAIPSAVT INPPASSSQA ISFPTGRTSG LNYYQTLIHQ HGGERQEPQP LQQHGMHFPM
401: HHRTVASQSS ATDIVSSGTM PARDTKQRPT RPCAYFNSAR GCRNGANCTF LHDVSAARKE QPKGSKRIKL DSRIAGRY
101: VIRWRCPPKV LHNPVWLVAA GEESEEVALQ NDRIFGALEA IYPRPSNIPP NPFVTPDVKD SQYDDSRTQL VPLLPVEEDD ASDQLEEPPV GLSSSYQQSD
201: KYDSATFRVP QASDAPFTTA QQQQPNGSIN TTRSGAPVEP DTVAAASAAY TAIIQSNRMG NMIDKDLLVE MLSDPAQLER LMKEYGALKH EQSTNSSVAP
301: MVQGPPPQMT ASVPVSFPDH TTTFHNINST LPPPPVLNRL PPPAIPSAVT INPPASSSQA ISFPTGRTSG LNYYQTLIHQ HGGERQEPQP LQQHGMHFPM
401: HHRTVASQSS ATDIVSSGTM PARDTKQRPT RPCAYFNSAR GCRNGANCTF LHDVSAARKE QPKGSKRIKL DSRIAGRY
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.