Factsheet for PGSC0003DMT400075650

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089260.1.1	Tomato	nucleus	94.48	94.67
VIT_18s0001g13880.t01	Wine grape	nucleus	48.67	52.08
KRH61063	Soybean	nucleus	37.63	42.79
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	34.97	42.01
CDY62587	Canola	mitochondrion, nucleus	34.97	41.91
Bra025776.1-P	Field mustard	extracellular	33.13	40.4
CDY29391	Canola	extracellular	33.13	40.4
CDX83740	Canola	nucleus	32.52	40.15
Bra016491.1-P	Field mustard	nucleus	32.52	40.05
CDY39347	Canola	mitochondrion	34.36	39.91
AT1G19860.2	Thale cress	nucleus	33.54	39.52
EES13033	Sorghum	mitochondrion	35.38	38.44
GSMUA_Achr1P19920_001	Banana	cytosol	34.15	37.44
Zm00001d001952_P001	Maize	mitochondrion	33.74	36.5
Zm00001d026536_P002	Maize	nucleus	32.31	33.05
GSMUA_Achr3P11230_001	Banana	cytosol	30.88	32.61
TraesCS2B01G520300.1	Wheat	mitochondrion	34.76	31.78
HORVU2Hr1G109820.1	Barley	mitochondrion	34.15	31.63
TraesCS2D01G492400.1	Wheat	mitochondrion	34.76	30.69
TraesCS2A01G492200.1	Wheat	mitochondrion	34.56	30.45
Os04t0663200-01	Rice	cytosol	23.52	29.26
HORVU2Hr1G109740.2	Barley	plastid	34.36	27.18
PGSC0003DMT400009146	Potato	nucleus	22.29	18.02
PGSC0003DMT400009142	Potato	plasma membrane	16.56	15.0
PGSC0003DMT400092162	Potato	nucleus	16.97	14.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400075650	EnsemblPlantsGene:PGSC0003DMG400029424	EntrezGene:102590271	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	PGSC:PGSC0003DMG400029424
RefSeq:XP_006342574.1	SEG:seg	UniParc:UPI000295823E	UniProt:M1CVJ7	MapMan:15.5.16	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029424]

Coordinates

chr12:+:57022119..57030844

Molecular Weight (calculated)

52346.8 Da

IEP (calculated)

7.405

GRAVY (calculated)

-0.464

Length

489 amino acids

Sequence
(BLAST)

001: MRGREKSKRV TWASDDSLCQ VKLFLSEDSP SQVGLGGAQD HLQAKISLPL HAGLLVSDDN LPPGFEGAQP ASLWKNKVAQ IPVIKWSRPP SFVLDTNWRV
101: VAGEESNDTE VQKQREMRVL EAIYPRESSI PPNPPMGPGD ETLHNDQHTP VVPLTPVEEE EVADPSFGTA ILTNAASSTA QVMQSGVPLC NRSAGNSLPV
201: HGISSPGGVA GLGIDAVAEA QAALTAFMAD SGQGNLIDRE LLIKILSDPK IVGQLVTHQG VGTSSHSVPA MNTQSMSAAS HMPNTRLQAS SIAAPSQPVV
301: SRANPSFYHS GRTDPPPVQV SRTELVIPSM AGATNGPFHS APSRIGPVPS LRPRIPEPMS APLPAPVATM STPTSSMPAP VARDINYYKS LIQQHGGERQ
401: ETLPPQYNNS NRNNQQLGSV QESQNSYNSR DTKPKIMKPC IYYNSSRGCR HGANCAYLHD ASPQQRGVGS LPEVQSSKRM KMDREITGT

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.