Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g084080.1.1 | Tomato | cytosol | 11.9 | 58.06 |
| PGSC0003DMT400092162 | Potato | nucleus | 48.1 | 51.87 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 38.02 | 42.59 |
| Solyc02g084160.1.1 | Tomato | cytosol | 10.74 | 40.88 |
| Bra012068.1-P | Field mustard | cytosol | 10.41 | 35.0 |
| KRH28783 | Soybean | nucleus | 15.21 | 26.36 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 17.19 | 26.26 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 17.36 | 25.67 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 20.83 | 25.56 |
| KRH69800 | Soybean | plastid | 22.64 | 24.68 |
| KRH69802 | Soybean | mitochondrion | 22.15 | 23.55 |
| KRH76672 | Soybean | nucleus | 15.04 | 23.39 |
| AT5G66270.1 | Thale cress | cytosol | 17.19 | 23.16 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 16.53 | 22.42 |
| PGSC0003DMT400075650 | Potato | nucleus | 18.02 | 22.29 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 16.86 | 22.03 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 17.02 | 21.82 |
| EES13033 | Sorghum | mitochondrion | 16.03 | 21.56 |
| Os04t0663200-01 | Rice | cytosol | 13.88 | 21.37 |
| AT3G51180.1 | Thale cress | nucleus | 18.35 | 21.31 |
| CDX73744 | Canola | mitochondrion, nucleus | 17.52 | 21.24 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 18.68 | 21.12 |
| Zm00001d001952_P001 | Maize | mitochondrion | 15.7 | 21.02 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 19.17 | 20.9 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 19.01 | 20.76 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 18.02 | 20.64 |
| Zm00001d026536_P002 | Maize | nucleus | 16.2 | 20.5 |
| Bra036832.1-P | Field mustard | nucleus | 16.2 | 19.76 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 21.82 | 18.54 |
| HORVU2Hr1G109740.2 | Barley | plastid | 18.51 | 18.12 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009146 | EnsemblPlantsGene:PGSC0003DMG400003556 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | PGSC:PGSC0003DMG400003556 |
| SEG:seg | SUPFAM:SSF90229 | UniParc:UPI000295C077 | UniProt:M0ZVP4 | MapMan:15.5.16 | : |
Description
Zinc finger CCCH domain-containing protein 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400003556]
Coordinates
chr2:-:39558342..39562472
Molecular Weight (calculated)
66858.5 Da
IEP (calculated)
9.995
GRAVY (calculated)
-0.731
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLKKSRKVS WAPGPDFCQV KHYRKEDCPS KVGSGSQLKQ THQSIDRSSS ERRYCLKKSK ERLSSKSLAI WKCPPKFHLN EKWLVVAGEE SKEASKQEDR
101: KMRVIEAVFP NRSAIPPNPY NLSDLEQSYD DNQTPVIRTI PIEEEEVDVE VLTQTISRCL PNSPSSSVRT ITSQKLPDNG KSLPEPLSTF PNARKPSSNS
201: FLSKRPPSNV QSTPTYHSRC QNLKGSKQTQ VSPKLPVSYS FVPRYQPTFK SIGTQTEIFP DQPANENHGA KYQTICENQN IPQLKSQVSG MAPAKHNPVT
301: ESPSTHDLTV AVATTVAALA KSQEQGSLIG TNLLVRLLLN PEEIPKLMNE RGIATNTAMS RPEDLLLPLP RKKPDKVINN PINECQAPLA GSGPSFVPKP
401: MANSAPLMMT KPETSMRSNL VVEQGPPPSV ETANTTESKS LAHPTSDLNL ENIKKLVNKY RVLDNEGGKP SVNSELVSKY GRTTLQPKLS ISPNVGHTSP
501: SSSILTSHTP LQKDINYCKS LIKQHGEQYE FVVDESLQNT NPHGTTWGAG LLKNQKPIPR SLTPCVFFNK PKGCRNGSSC RFLHDISGQK RSGGTSEGRD
601: SKRMK
101: KMRVIEAVFP NRSAIPPNPY NLSDLEQSYD DNQTPVIRTI PIEEEEVDVE VLTQTISRCL PNSPSSSVRT ITSQKLPDNG KSLPEPLSTF PNARKPSSNS
201: FLSKRPPSNV QSTPTYHSRC QNLKGSKQTQ VSPKLPVSYS FVPRYQPTFK SIGTQTEIFP DQPANENHGA KYQTICENQN IPQLKSQVSG MAPAKHNPVT
301: ESPSTHDLTV AVATTVAALA KSQEQGSLIG TNLLVRLLLN PEEIPKLMNE RGIATNTAMS RPEDLLLPLP RKKPDKVINN PINECQAPLA GSGPSFVPKP
401: MANSAPLMMT KPETSMRSNL VVEQGPPPSV ETANTTESKS LAHPTSDLNL ENIKKLVNKY RVLDNEGGKP SVNSELVSKY GRTTLQPKLS ISPNVGHTSP
501: SSSILTSHTP LQKDINYCKS LIKQHGEQYE FVVDESLQNT NPHGTTWGAG LLKNQKPIPR SLTPCVFFNK PKGCRNGSSC RFLHDISGQK RSGGTSEGRD
601: SKRMK
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.