Factsheet for Solyc02g084160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g069830.2.1
Solyc02g086840.2.1
Solyc03g096000.2.1
Solyc04g016400.2.1
Solyc05g052510.2.1
Solyc06g005800.2.1
Solyc06g051310.2.1
Solyc06g076430.2.1
Solyc10g079890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	Solyc06g005800.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc06g076430.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc02g024070.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc02g069830.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G51180.1	Solyc04g016400.2.1	AT5G04170.1	21798944
AT3G51180.1	Solyc10g079890.1.1	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084110.1.1	Tomato	cytosol	40.88	42.76
Solyc02g084080.1.1	Tomato	cytosol	26.42	33.87
Solyc02g038790.1.1	Tomato	cytosol	30.82	24.38
Bra012068.1-P	Field mustard	cytosol	14.47	12.78
PGSC0003DMT400009146	Potato	nucleus	40.88	10.74
KRH76672	Soybean	nucleus	24.53	10.03
Solyc02g084200.1.1	Tomato	nucleus	35.85	9.6
Bra036832.1-P	Field mustard	nucleus	25.16	8.06
CDX77980	Canola	mitochondrion, nucleus, plastid	23.9	8.05
CDY67080	Canola	cytosol, nucleus, plastid	19.5	7.83
CDX73744	Canola	mitochondrion, nucleus	24.53	7.82
KRH28783	Soybean	nucleus	16.98	7.74
KRH28782	Soybean	cytosol, nucleus, plastid	23.27	7.51
CDY45225	Canola	cytosol, nucleus, plastid	18.87	7.33
AT3G51180.1	Thale cress	nucleus	23.27	7.1
KRH69800	Soybean	plastid	23.9	6.85
AT5G66270.1	Thale cress	cytosol	18.87	6.68
Os04t0663200-01	Rice	cytosol	16.35	6.62
GSMUA_Achr3P11230_001	Banana	cytosol	18.24	6.26
KRH69802	Soybean	mitochondrion	22.01	6.15
GSMUA_Achr1P19920_001	Banana	cytosol	16.98	6.05
Zm00001d001952_P001	Maize	mitochondrion	16.98	5.97
TraesCS2B01G520300.1	Wheat	mitochondrion	19.5	5.79
EES13033	Sorghum	mitochondrion	16.35	5.78
TraesCS2D01G492400.1	Wheat	mitochondrion	19.5	5.6
TraesCS2A01G492200.1	Wheat	mitochondrion	19.5	5.59
Solyc12g089260.1.1	Tomato	nucleus	16.98	5.53
Zm00001d026536_P002	Maize	nucleus	16.35	5.44
HORVU2Hr1G109820.1	Barley	mitochondrion	17.61	5.3
HORVU2Hr1G109740.2	Barley	plastid	19.5	5.02
VIT_04s0023g03180.t01	Wine grape	cytosol	20.13	4.49

Protein Annotations

EnsemblPlants:Solyc02g084160.1.1	EnsemblPlantsGene:Solyc02g084160.1	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	SEG:seg	UniParc:UPI0002768A59
UniProt:K4BAT2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2:-:47345640..47346853

Molecular Weight (calculated)

17010.5 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.106

Length

159 amino acids

Sequence
(BLAST)

001: MSYRLSSAGY DDSQTPVVRK FPIEEESAHD LTASVATTVA VLAKSQERGS LIDVNLLVRL LLSSGEIPKL MNECGMATNT AIVASLNAAM SRPVDLLVPL
101: PRTKPDEVIN KPINGCQAPH AGFGQSFEPK PLAKSVPLTM TKHETSVISD LVNEQGTPQ

Best Arabidopsis Sequence Match ( AT3G51180.1 )
(BLAST)

001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F

Arabidopsis Description

Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.