Factsheet for Solyc06g076430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

vacuole 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078199	Potato	cytosol	99.68	99.68
Solyc06g005800.2.1	Tomato	cytosol, nucleus	94.52	91.85
CDY71651	Canola	cytosol	62.58	87.78
CDX71136	Canola	cytosol	85.16	85.44
CDX88683	Canola	cytosol	85.16	85.44
AT5G59160.1	Thale cress	cytosol	85.81	85.26
Bra006731.1-P	Field mustard	cytosol	84.84	85.11
Bra020335.1-P	Field mustard	cytosol	85.48	84.94
CDY32662	Canola	cytosol	85.48	84.94
Bra002590.1-P	Field mustard	cytosol	85.16	84.89
VIT_06s0004g05530.t01	Wine grape	cytosol	82.26	84.72
CDY33013	Canola	cytosol	81.94	83.01
Bra018397.1-P	Field mustard	cytosol	81.61	82.95
HORVU4Hr1G060490.1	Barley	cytosol	85.81	82.87
TraesCS4A01G093600.1	Wheat	cytosol	85.81	82.87
TraesCS4D01G211500.1	Wheat	cytosol	85.81	82.87
CDX80301	Canola	cytosol	81.61	82.68
Solyc06g030490.2.1	Tomato	cytosol	80.97	82.57
TraesCS4B01G210800.1	Wheat	cytosol	85.48	82.55
HORVU4Hr1G060530.1	Barley	mitochondrion, peroxisome	82.58	82.32
CDY02866	Canola	cytosol	85.48	82.04
Os03t0268000-01	Rice	cytosol	85.16	81.99
Bra018191.1-P	Field mustard	cytosol	81.94	81.94
AT3G46820.1	Thale cress	cytosol	81.94	81.41
GSMUA_Achr8P19510_001	Banana	cytosol	73.23	81.36
AT2G29400.1	Thale cress	cytosol	83.23	81.13
Zm00001d047835_P003	Maize	cytosol, extracellular, plasma membrane	84.52	81.11
Bra000475.1-P	Field mustard	cytosol	82.58	80.5
CDX83308	Canola	cytosol	82.58	80.5
EER95117	Sorghum	cytosol	83.55	80.43
CDY45437	Canola	cytosol	82.58	80.25
CDY40180	Canola	cytosol	81.94	80.13
CDX86100	Canola	cytosol	78.71	79.74
CDX95749	Canola	cytosol	82.26	79.69
Solyc06g053630.2.1	Tomato	cytosol	82.58	79.5
Solyc05g055060.2.1	Tomato	cytosol, nucleus	81.94	78.15
Solyc09g090060.2.1	Tomato	cytosol	80.97	76.06
Solyc01g099860.2.1	Tomato	cytosol, unclear	71.61	70.48
Zm00001d028568_P004	Maize	cytosol	84.19	63.66
Solyc05g006590.2.1	Tomato	cytosol	45.48	46.08
Solyc01g011340.2.1	Tomato	cytosol, plastid	45.48	46.08
Solyc01g034020.2.1	Tomato	cytosol	44.19	44.77
Solyc07g065020.2.1	Tomato	cytosol	43.87	44.59
Solyc01g073650.2.1	Tomato	cytosol	44.19	43.91
Solyc01g005950.2.1	Tomato	cytosol, extracellular	43.87	43.45
Solyc06g072140.2.1	Tomato	cytosol	39.68	40.59
Solyc03g019900.2.1	Tomato	cytosol	39.35	40.26
CDX89311	Canola	cytosol, plastid	26.77	12.03

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052
UniProt:K4CA03	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF392	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
EnsemblPlantsGene:Solyc06g076430.2	EnsemblPlants:Solyc06g076430.2.1	UniParc:UPI0002767119	:	:	:

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:K4CA03]

Coordinates

chr6:-:47489807..47492582

Molecular Weight (calculated)

35381.6 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.150

Length

310 amino acids

Sequence
(BLAST)

001: MAQNGQGIEP AVLDDIINRL LEFRNARTVR QVQLSEAEIR SLCTAARAIF LQQPNLLELE APIKICGDIH GQYGDLLRLF EYGGFPPQSN YLFLGDYVDR
101: GKQSLETICL LLAYKIKYPE NFFLLRGNHE CASINRIYGF YDECKRRFNV RLWKVFTDCF NCLPVAALID DKILCMHGGL SPDLTDMDLI RNLPRPTDVP
201: DSGLLCDLLW SDPSREVKGW GMNDRGVSYT FGPDKVAEFL MQHDMDLVCR AHQVVEDGYE FFAERQLVTV FSAPNYCGEF DNAGAMMSVD ENLMCSFQIL
301: KPADRKPRFL

Best Arabidopsis Sequence Match ( AT5G59160.3 )
(BLAST)

001: MAQQGQGSMD PAALDDIIRR LLDYRNPKPG TKQAMLNESE IRQLCIVSRE IFLQQPNLLE LEAPIKICGD IHGQYSDLLR LFEYGGFPPT ANYLFLGDYV
101: DRGKQSLETI CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF SVRLWKVFTD SFNCLPVAAV IDDKILCMHG GLSPDLTNVE QIKNIKRPTD
201: VPDSGLLCDL LWSDPSKDVK GWGMNDRGVS YTFGPDKVAE FLIKNDMDLI CRAHQVVEDG YEFFADRQLV TIFSAPNYCG EFDNAGAMMS VDESLMCSFQ
301: ILKPADRKPR FL

Arabidopsis Description

TOPP2Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UGI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.