CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80301	Canola	cytosol	12.17	27.45
CDY18815	Canola	cytosol	12.61	27.36
CDX71136	Canola	cytosol	12.17	27.18
CDX88683	Canola	cytosol	12.17	27.18
CDY27754	Canola	cytosol	12.61	27.1
CDY05182	Canola	cytosol	12.61	27.1
CDY20490	Canola	cytosol	12.32	27.07
CDY10577	Canola	cytosol	11.3	26.8
CDY33013	Canola	cytosol	11.88	26.8
Solyc06g076430.2.1	Tomato	cytosol, nucleus	12.03	26.77
PGSC0003DMT400078199	Potato	cytosol	12.03	26.77
CDY24946	Canola	cytosol	12.32	26.73
CDY25019	Canola	cytosol	12.32	26.73
CDY61002	Canola	cytosol	12.32	26.73
CDY32662	Canola	cytosol	12.03	26.6
CDY13242	Canola	cytosol	12.32	26.56
GSMUA_Achr8P19510_001	Banana	cytosol	10.72	26.52
CDY05560	Canola	cytosol	12.17	26.42
CDX90793	Canola	cytosol	12.32	26.4
CDX80617	Canola	cytosol	12.17	26.33
CDX86799	Canola	cytosol	12.17	26.25
TraesCS4D01G211500.1	Wheat	cytosol	12.17	26.17
HORVU4Hr1G060490.1	Barley	cytosol	12.17	26.17
TraesCS4A01G093600.1	Wheat	cytosol	12.17	26.17
TraesCS4B01G210800.1	Wheat	cytosol	12.17	26.17
CDY05136	Canola	cytosol	12.17	26.09
Os03t0268000-01	Rice	cytosol	12.17	26.09
CDY02866	Canola	cytosol	12.03	25.7
EER95117	Sorghum	cytosol	11.88	25.47
HORVU4Hr1G060530.1	Barley	mitochondrion, peroxisome	11.45	25.4
CDY45437	Canola	cytosol	11.74	25.39
CDY71651	Canola	cytosol	8.12	25.34
CDX95749	Canola	cytosol	11.74	25.31
CDY40180	Canola	cytosol	11.59	25.24
CDY34395	Canola	cytosol	11.74	25.23
CDY25556	Canola	cytosol	11.74	25.23
CDX83308	Canola	cytosol	11.59	25.16
Zm00001d047835_P003	Maize	cytosol, extracellular, plasma membrane	11.74	25.08
CDX86100	Canola	cytosol	10.87	24.51
Solyc06g005800.2.1	Tomato	cytosol, nucleus	11.3	24.45
PGSC0003DMT400053683	Potato	cytosol	9.13	24.14
CDY40717	Canola	cytosol	12.46	23.63
CDX86135	Canola	cytosol	8.7	23.62
CDX74139	Canola	cytosol	12.46	22.87
CDY22350	Canola	cytosol	10.87	22.66
CDY60901	Canola	cytosol	10.87	22.66
CDY24572	Canola	cytosol	9.86	22.44
CDY25366	Canola	cytosol	9.71	22.11
CDY14840	Canola	cytosol	10.0	22.04
CDY47976	Canola	cytosol	10.0	22.04
CDX82268	Canola	cytosol	9.57	21.78
CDY33438	Canola	cytosol	9.57	21.78
CDY70204	Canola	cytosol	9.57	21.78
CDX71949	Canola	cytosol	9.71	21.41
CDX88988	Canola	cytosol	9.71	21.41
CDY06035	Canola	cytosol	9.71	21.41
CDY51518	Canola	cytosol	9.71	21.41
CDX98300	Canola	cytosol	9.71	21.41
CDY55398	Canola	cytosol	9.71	21.41
CDY00569	Canola	cytosol	9.71	21.41
CDY66916	Canola	cytosol	9.71	21.41
CDY69521	Canola	cytosol	9.71	21.41
CDY69052	Canola	cytosol	9.57	21.02
CDY38778	Canola	cytosol	9.13	20.59
CDY11632	Canola	cytosol	9.13	20.59
Zm00001d028568_P004	Maize	cytosol	12.17	20.49
CDX94291	Canola	cytosol	8.99	20.33
CDX89309	Canola	cytosol	8.99	20.33
CDY34892	Canola	cytosol	8.99	20.26
CDY52461	Canola	cytosol	8.99	20.26
CDX93426	Canola	cytosol	8.99	20.26
CDY45151	Canola	cytosol	8.99	20.26
CDY07799	Canola	cytosol	8.99	20.26
CDY30909	Canola	cytosol	8.99	20.26
CDY37977	Canola	cytosol	8.99	20.26
CDY03595	Canola	cytosol	9.71	20.24
CDX92800	Canola	cytosol	8.84	20.0
CDY46683	Canola	cytosol	8.84	20.0
CDX67746	Canola	cytosol	5.8	19.7
CDY36067	Canola	plasma membrane	10.29	9.67

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.418.10	MapMan:20.2.2.4	GO:A0A078DJD3	InterPro:Actinin_actin-bd_CS	EnsemblPlants:CDX89311
ProteinID:CDX89311	ProteinID:CDX89311.1	InterPro:CH-domain	InterPro:CH_dom_sf	InterPro:EF-hand-dom_pair	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149526001	InterPro:IPR001715	InterPro:IPR036872	PFAM:PF00307
ScanProsite:PS00020	PFscan:PS50021	PANTHER:PTHR19961	PANTHER:PTHR19961:SF37	SMART:SM00033	SUPFAM:SSF47473
SUPFAM:SSF47576	UniParc:UPI0004EDFB0E	SEG:seg	:	:	:

Description

BnaA01g15820D

Coordinates

chrLK031858:-:825059..829020

Molecular Weight (calculated)

77166.2 Da

IEP (calculated)

5.149

GRAVY (calculated)

-0.240

Length

690 amino acids

Sequence
(BLAST)

001: MSGFVGVVVS DPWLQSQFTQ VELRTLNSKF VSLKNSSGNI TVEDLPPLLS KFKAISATFK EDEIKEILQE LASDTSSDVE FEEFLKIYLN LQGKAAEKSG
101: GHSSSFLKAS TTTLLHTINQ SEKGSFVQHI NRYLGDDPFL KQFLPLDPDS NQLYELVKDG VLLCKLINVA VPGTIDERAI NTKRVLNPWE RNENHTLCLN
201: SAKAVGCTVV NIGTQDLAEG RPHLVLGLIS QLIKIQLLAD LNLKKTPQLV ELLEDSDDVE ELLRLPPEKV LLKWMNFHLK KGGYKKTVSN FSSDLKDAQA
301: YAYLLNVLAP EHCDPATLDA KDPLERAELV LCHAERMNCK RYLTAEEIVE GSPNLNLAFV AQIFHERNGL STDGKYSFAE MMTEDVQTCR DERCYRLWIN
401: SLGIESYVNN VFEDVRNGWI LLEVLDKITP GSVNWKHASK PPIKMPFRKV ENCNQVVKIG KELNFSLVNV AGNDIVQGNK KLILGLLWQL MRFHMLQLLK
501: SLRSRTRGKD MTDADILSWA NRKVRTMGRK SQIESFKDKS LSNGSFFLDL LWAVEPRVVN WNLVTKGETD EEKRLNATYI VSVARKLGCS VFLLPEDIVE
601: VNQKMILILT ASIMYWSLQK RSTESSDSSS SQSTTTTCTT TSTDASPAPS VTGEDEVSSL SGEVSSLAVD DNEADAVSDI TIVSEETPNE

Best Arabidopsis Sequence Match ( AT4G26700.4 )
(BLAST)

001: MSGYVGVVVS DPWLQSQFTQ VELRTLNSKY VSVKNQNGKV TIEDLPPLFA KLKALSATFK EDEIKGMLGE LGSDTSTDVS FEEFLKIYLN LLSKAAEKSG
101: GHHKNSSSFL KACTTTLLHT IYQSEKGPFV QHINRYLGDD PFLKQFLPLD PHSNQLYELV KDGVLLCKLI NVAVPGTIDE RAINTKRVLN PWERNENHTL
201: CLNSAKAVGC SVVNIGTQDL AEGRPHLVLG LISQLIKIQV LADLNLKKTP QLVELLEDSD DVEELLRLPP EKVLLKWMNF HLKKGGYKKT VSNFSADLKD
301: AQAYAFLLNV LAPEHCDPAT LDAKDPLERA ELVLSHAERM NCKRYLTAEE IVEGSSTLNL AFVAQIFHER NGLNKDGKYA FAEMMTEDVE TCRDERCYRL
401: WINSLGIDSY VNNVFEDVRN GWILLEVLDK VSPSSVNWKH ASKPPIKMPF RKVENCNQVI KIGKQLKFSL VNVAGNDIVQ GNKKLILGLL WQLMRFHMLQ
501: LLKSLRSRTL GKEMTDADIL SWANRKVRTM GRKLQIESFK DKSLSSGLFF LNLLWAVEPR VVNWNLVTKG ETDDEKRLNA TYIVSVARKL GCSVFLLPED
601: IVEVNQKMIL ILTASIMYWS LQRHSRESSD SSSTQSTTTT CTSTASSPAP SVTEEEEVSS LSGEVTSLAV GDAVSEITTV SEEASIE

Arabidopsis Description

FIM1Fimbrin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q7G188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.