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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 3
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:mitochondrion
Predotar:secretory
PProwler:plastid
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67659
CDX72108
CDX76014
CDY27189
CDY47381
CDY51261

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G19980.1 CDX67659 AT3G56850.1 23404889
AT3G19980.1 CDX72108 AT3G56850.1 23404889
AT3G19980.1 CDX76014 AT3G56850.1 23404889
AT3G19980.1 CDY27189 AT3G56850.1 23404889
AT3G19980.1 CDY47381 AT3G56850.1 23404889
AT3G19980.1 CDY51261 AT3G56850.1 23404889
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027930.1-P Field mustard cytosol 25.48 100.0
CDX82268 Canola cytosol 41.01 99.34
CDY33438 Canola cytosol 40.46 98.02
CDY70204 Canola cytosol 40.46 98.02
CDY25366 Canola cytosol 40.19 97.36
CDY24572 Canola cytosol 39.92 96.7
AT3G19980.1 Thale cress cytosol 39.65 96.04
Solyc03g019900.2.1 Tomato cytosol 39.1 94.72
PGSC0003DMT400039336 Potato cytosol 39.1 94.72
KRH36174 Soybean cytosol, nucleus 39.1 94.72
Solyc06g072140.2.1 Tomato cytosol 38.96 94.39
VIT_10s0071g00950.t01 Wine grape cytosol 38.96 94.39
KRH36176 Soybean cytosol 38.96 94.39
KRG90576 Soybean cytosol, nucleus 38.96 94.39
GSMUA_AchrUn_... Banana cytosol 38.42 93.07
GSMUA_Achr9P21520_001 Banana cytosol 38.28 93.05
HORVU3Hr1G064290.2 Barley cytosol 37.87 91.75
TraesCS3D01G261300.1 Wheat cytosol 37.87 91.75
TraesCS3A01G261200.1 Wheat cytosol 37.87 91.75
TraesCS3B01G294200.1 Wheat cytosol, golgi, plastid 37.87 91.75
CDY69052 Canola cytosol 39.1 91.4
Os01t0691700-01 Rice cytosol, plasma membrane 37.6 91.09
EES01303 Sorghum cytosol 37.19 90.1
Zm00001d011634_P003 Maize cytosol 37.19 90.1
TraesCS1D01G380200.1 Wheat cytosol 36.78 89.11
CDY03595 Canola cytosol 39.1 86.71
PGSC0003DMT400069607 Potato cytosol 38.83 85.07
KRH40922 Soybean cytosol 35.42 84.69
TraesCS1B01G393500.1 Wheat cytosol 35.15 84.59
HORVU1Hr1G083000.1 Barley cytosol 39.92 82.07
TraesCS1A01G373300.1 Wheat cytosol 38.83 79.61
CDX92800 Canola cytosol 24.52 59.02
CDY46683 Canola cytosol 24.52 59.02
CDX89309 Canola cytosol 24.39 58.69
CDX94291 Canola cytosol 24.39 58.69
CDX93426 Canola cytosol 23.71 56.86
CDY37977 Canola cytosol 23.71 56.86
CDY07799 Canola cytosol 23.43 56.21
CDY34892 Canola cytosol 23.43 56.21
CDY11632 Canola cytosol 23.3 55.88
CDY52461 Canola cytosol 23.3 55.88
CDY38778 Canola cytosol 23.3 55.88
CDY45151 Canola cytosol 23.02 55.23
CDY30909 Canola cytosol 23.02 55.23
CDY47976 Canola cytosol 23.43 54.95
CDY14840 Canola cytosol 23.43 54.95
CDX71949 Canola cytosol 23.3 54.63
CDY06035 Canola cytosol 23.3 54.63
CDX88988 Canola cytosol 23.3 54.63
CDX98300 Canola cytosol 23.3 54.63
CDY00569 Canola cytosol 23.3 54.63
CDY69521 Canola cytosol 23.16 54.31
CDY66916 Canola cytosol 23.16 54.31
CDY55398 Canola cytosol 23.16 54.31
CDY51518 Canola cytosol 23.16 54.31
CDX67746 Canola cytosol 13.62 49.26
CDY71651 Canola cytosol 12.94 42.99
CDX86135 Canola cytosol 14.31 41.34
CDX71136 Canola cytosol 17.03 40.45
CDX83308 Canola cytosol 17.44 40.25
CDX80301 Canola cytosol 16.76 40.2
CDY24946 Canola cytosol 17.3 39.94
CDY33013 Canola cytosol 16.62 39.87
CDX80617 Canola cytosol 17.3 39.81
CDY20490 Canola cytosol 17.03 39.81
CDX88683 Canola cytosol 16.76 39.81
CDX95749 Canola cytosol 17.3 39.69
CDY05560 Canola cytosol 17.17 39.62
CDY18815 Canola cytosol 17.17 39.62
CDY61002 Canola cytosol 17.17 39.62
CDY10577 Canola cytosol 15.67 39.52
CDY32662 Canola cytosol 16.76 39.42
CDY25019 Canola cytosol 17.03 39.31
CDY05182 Canola cytosol 16.89 38.63
CDY27754 Canola cytosol 16.89 38.63
CDY45437 Canola cytosol 16.76 38.56
CDX90793 Canola cytosol 16.89 38.51
CDY40180 Canola cytosol 16.62 38.49
CDX86799 Canola cytosol 16.76 38.44
CDY13242 Canola cytosol 16.76 38.44
CDY22350 Canola cytosol 17.3 38.37
CDY02866 Canola cytosol 16.76 38.08
CDX86100 Canola cytosol 15.8 37.91
CDY05136 Canola cytosol 16.62 37.89
CDY60901 Canola cytosol 17.03 37.76
CDY34395 Canola cytosol 16.35 37.38
CDY25556 Canola cytosol 16.35 37.38
CDY40717 Canola cytosol 17.71 35.71
CDX74139 Canola cytosol 18.26 35.64
CDX89311 Canola cytosol, plastid 9.67 10.29
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.1.5Gene3D:3.60.21.10GO:A0A078HE45UniProt:A0A078HE45
InterPro:AB_hydrolaseEnsemblPlants:CDY36067ProteinID:CDY36067ProteinID:CDY36067.1InterPro:Calcineurin-like_PHP_ApaHncoils:Coil
InterPro:DUF829_TMEM53GO:GO:0003674GO:GO:0003824GO:GO:0004721GO:GO:0006464GO:GO:0006470
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00059896001
InterPro:IPR029052InterPro:IPR029058InterPro:Metallo-depent_PP-likePFAM:PF00149PFAM:PF05705PRINTS:PR00114
ScanProsite:PS00125PANTHER:PTHR12265PANTHER:PTHR12265:SF27SMART:SM00156SUPFAM:SSF53474SUPFAM:SSF56300
InterPro:Ser/Thr-sp_prot-phosphataseUniParc:UPI0004EEE32FSEG:seg:::
Description
BnaC03g41310DSerine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A078HE45]
Coordinates
chrLK032366:-:310098..315612
Molecular Weight (calculated)
81421.8 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.165
Length
734 amino acids
Sequence
(BLAST)
001: MGSLSGIIQR PLVAAAAVIA ASVSADVSDK FSSLRSLVRG SESDQIAASV SGSVHDERSL WVSQISDSKL KDFSFVSRIR LPVPNVDLLL APNPTYYLSP
101: SVTSLSALRS AYQSAELAKA SKPAAFTVGA SLVAPDVSYK WHLPETSALD LSGSSSCASE KNRTVVVLLG WLGSKQKHLK KYADWYTSRG YHVITFTLPM
201: NEIMSYKVGG KAEKNVDSLV NHLADWLDEE EQQQKNLVFH TFSNTGWLTY GAILEKFQKQ DSSLMGRVKG CIVDSAPVAA ADPTVWASGF SAALLKKNSV
301: ATRGSASSSC ESNIGGVNFS EPKPAVTETA LLLILEKFFG VILNLPKVNR RLADVVETLS SSQPRCPQLY IYSSADRVIP AGQVESFIVE QRKAGHEVRA
401: CNFISSPHVD HFRMTVRVKK SNASGGIKGR AMDLDQWISK VKDGQHLSED ELQLLCEYVK EILIEQSNVQ PVNSPVTVCG DIHGQFHDLM KLFQTGGHVP
501: DTNYIFMGDF VDRGYNSLEV FTILLLLKAR HPANITLLRG NHESRQLTQV YGFYDECQRK YGNANAWRYC TDVFDYLTIS AIIDSTVLCV HGGLSPDVRT
601: IDQIRLVDRN CEIPHEGPFC DLMWSDPEDI ETWAVSPRGA GWLFGSRVTT EFNHINKLDL VCRAHQLVQE GLKYMFQDKG LVTVWSAPNY CYRCGNVASI
701: LIFDENMERD VKYFNETEEN NQMRGPRTGV PYFL
Best Arabidopsis Sequence Match ( AT3G19970.2 )
(BLAST)
001: MGSLSGIIQR PLVAAAAVIT ASVSADVSER FSSLRSLVRG SESEQIAPSV SGLVQEERSL WVSQVSASKL ADLSFVSRIC VPVPNVDLLA SNPSCSLATS
101: VTSLSALRSV YQSAELAKAS KPVAFTIGAS LVVPDISYRW HLPEPSAVDM SGSSSCVSEK NRTVVVLLGW LGSKQKHLKK YADWYTSKGY HVITFTLPMN
201: EIMSYQVGGK AEKNIESLVN HLADWLDEEQ KKNLVFHTFS NTGWLTYGAI LEKFQKQDSS LMGRVKGCIV DSAPVAAADP TVWASGFSAA FLKKSSVATK
301: GSASSSYESN GINISQPKPA ATETALLLVL EKFFAVILNL PKVNRRLADV LDTLSTAQPS CPQLYIYSSA DRVIPVEQVE SFIVEQRKAG HEVRACNFIS
401: SPHVDHFRSN PELYTAELNH FMNNFVLSCC HHSS
Arabidopsis Description
AT3g19970/MZE19_2 [Source:UniProtKB/TrEMBL;Acc:Q9LHE8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.