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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY00518
CDY31914
CDY32592
CDY38907

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05580.1 CDY00518 AT5G52200.1 21798944
AT3G05580.1 CDY31914 AT5G52200.1 21798944
AT3G05580.1 CDY32592 AT5G52200.1 21798944
AT3G05580.1 CDY38907 AT5G52200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001155.1-P Field mustard cytosol 84.04 99.37
CDY18815 Canola cytosol 82.45 97.48
CDY27754 Canola cytosol 81.12 95.02
CDY05182 Canola cytosol 80.85 94.7
AT3G05580.1 Thale cress cytosol 79.52 94.03
CDY25019 Canola cytosol 77.39 91.51
CDY05560 Canola cytosol 77.13 91.19
CDX80617 Canola cytosol 77.13 90.91
CDX86135 Canola cytosol 61.17 90.55
CDY40717 Canola cytosol 87.5 90.38
KRH68493 Soybean cytosol 73.94 85.8
Solyc01g099860.2.1 Tomato cytosol, unclear 70.74 84.44
PGSC0003DMT400063710 Potato cytosol 70.74 84.44
VIT_14s0060g01750.t01 Wine grape cytosol 70.48 81.54
CDY71651 Canola cytosol 45.74 77.83
KRG96778 Soybean nucleus 75.0 75.2
GSMUA_Achr11P... Banana cytosol 63.03 75.0
Os01t0349400-01 Rice cytosol 63.56 73.54
CDX88683 Canola cytosol 60.11 73.14
Zm00001d037601_P001 Maize cytosol 58.24 73.0
CDY10577 Canola cytosol 56.38 72.85
EES02921 Sorghum cytosol 62.77 72.62
TraesCS1D01G104400.1 Wheat cytosol 62.77 72.62
TraesCS1A01G095500.1 Wheat cytosol 62.77 72.62
TraesCS1B01G128100.1 Wheat cytosol 62.77 72.62
CDY20490 Canola cytosol 60.64 72.61
GSMUA_Achr2P02240_001 Banana cytosol 61.97 72.59
CDX71136 Canola cytosol 59.57 72.49
CDY32662 Canola cytosol 60.11 72.44
HORVU1Hr1G022370.5 Barley cytosol 62.5 72.09
CDY40180 Canola cytosol 60.64 71.92
CDY61002 Canola cytosol 60.64 71.7
CDX83308 Canola cytosol 60.64 71.7
CDY33013 Canola cytosol 58.24 71.57
CDY24946 Canola cytosol 60.37 71.38
CDX80301 Canola cytosol 57.98 71.24
CDY45437 Canola cytosol 60.37 71.16
CDX95749 Canola cytosol 60.37 70.94
TraesCS3D01G199300.1 Wheat cytosol 60.9 70.46
Zm00001d009844_P001 Maize cytosol 63.03 70.12
CDY25556 Canola cytosol 59.84 70.09
CDY02866 Canola cytosol 60.11 69.97
CDY34395 Canola cytosol 59.57 69.78
GSMUA_Achr8P06590_001 Banana cytosol 51.86 69.64
CDX86100 Canola cytosol 56.38 69.28
CDX86799 Canola cytosol 58.24 68.44
CDY13242 Canola cytosol 57.98 68.12
GSMUA_Achr11P... Banana cytosol 63.03 67.14
CDX90793 Canola cytosol 57.18 66.77
CDY22350 Canola cytosol 58.78 66.77
CDY60901 Canola cytosol 58.51 66.47
CDY05136 Canola cytosol 56.91 66.46
TraesCS3A01G195500.1 Wheat cytosol 60.9 66.19
TraesCS3B01G226800.1 Wheat cytosol 60.9 65.43
HORVU3Hr1G044550.3 Barley cytosol 48.14 60.54
Zm00001d009181_P005 Maize cytosol 52.13 53.26
OQU77459 Sorghum cytosol 64.63 51.16
CDY38778 Canola cytosol 36.44 44.77
CDY11632 Canola cytosol 36.17 44.44
CDY55398 Canola cytosol 36.97 44.41
CDY14840 Canola cytosol 36.97 44.41
CDY69521 Canola cytosol 36.97 44.41
CDY51518 Canola cytosol 36.97 44.41
CDY47976 Canola cytosol 36.97 44.41
CDY07799 Canola cytosol 35.9 44.12
CDY34892 Canola cytosol 35.9 44.12
CDY66916 Canola cytosol 36.7 44.09
CDX93426 Canola cytosol 35.64 43.79
CDY37977 Canola cytosol 35.64 43.79
CDX71949 Canola cytosol 36.44 43.77
CDX98300 Canola cytosol 36.44 43.77
CDX88988 Canola cytosol 36.44 43.77
CDY00569 Canola cytosol 36.44 43.77
CDY06035 Canola cytosol 36.44 43.77
CDY46683 Canola cytosol 35.37 43.61
CDX92800 Canola cytosol 35.37 43.61
CDY52461 Canola cytosol 35.37 43.46
CDY45151 Canola cytosol 35.37 43.46
CDY30909 Canola cytosol 35.37 43.46
CDX89309 Canola cytosol 35.11 43.28
CDX94291 Canola cytosol 35.11 43.28
CDY70204 Canola cytosol 33.51 41.58
CDY24572 Canola cytosol 33.51 41.58
CDY25366 Canola cytosol 33.51 41.58
CDY33438 Canola cytosol 33.24 41.25
CDX82268 Canola cytosol 32.98 40.92
CDX67746 Canola cytosol 22.07 40.89
CDY69052 Canola cytosol 33.51 40.13
CDY03595 Canola cytosol 33.24 37.76
CDY36067 Canola plasma membrane 35.64 18.26
CDX89311 Canola cytosol, plastid 22.87 12.46
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:18.4.24.1.1Gene3D:3.60.21.10GO:A0A078CD87EnsemblPlants:CDX74139
ProteinID:CDX74139ProteinID:CDX74139.1InterPro:Calcineurin-like_PHP_ApaHGO:GO:0003674GO:GO:0003824GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00111898001InterPro:IPR029052InterPro:Metallo-depent_PP-likePFAM:PF00149PFAM:PF16891PIRSF:PIRSF033096
PRINTS:PR00114ScanProsite:PS00125PANTHER:PTHR11668PANTHER:PTHR11668:SF262SMART:SM00156SUPFAM:SSF56300
InterPro:STPPase_NInterPro:Ser/Thr-sp_prot-phosphataseUniParc:UPI0004EE1B64:::
Description
BnaA03g29080D
Coordinates
chrLK031800:+:1514358..1517179
Molecular Weight (calculated)
42863.1 Da
IEP (calculated)
6.692
GRAVY (calculated)
-0.143
Length
376 amino acids
Sequence
(BLAST)
001: MCCIMLIIYG PLKSKNCVEN RFPIFPDRRE RERKTTTYLH HLFFSPLNTL KLKLSFLTMT TTMEAVMEIS TVDDIIRRLL EGKGGKQVQL SEIEIRQLCV
101: NARQIFLSQP NLLDLHAPIR ICGDIHGQYQ DLLRLFEYGG YPPSAHYLFL GDYVDRGKQS LETICLLLAY KIRYPSKIFL LRGNHEDAKI NRIYGFYDEC
201: KRRFNVRLWK IFTDCFNCLP VAALIDGKIL CMHGGLSPEL ENLEQIREIE RPTEIPDNGL LCDLLWSDPD QKSEGWADSD RGISCTFGAD VVAEFLDKND
301: LDLICRGHQV VEDGYEFFAK RRLVTIFSAP NYGGEFDNAG ALLSVDQSLV CSFEILKPAP ASSGIPLKKV PKMGKS
Best Arabidopsis Sequence Match ( AT3G05580.1 )
(BLAST)
001: MMTSMEGMME MGVLDDIIRR LLEGKGGKQV QLSEVEIRQL CVNARQIFLS QPNLLELHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI FLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKIFTDCFNC LPVAALIDEK ILCMHGGLSP ELENLGQIRE IQRPTEIPDN
201: GLLCDLLWSD PDQKNEGWTD SDRGISCTFG ADVVADFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDQS LVCSFEILKP
301: APASSTNPLK KVPKMGKS
Arabidopsis Description
TOPP9Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VKY6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.