CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91469
KRH09088
KRH35346
KRH38536

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05580.1	KRG91469	AT5G52200.1	21798944
AT3G05580.1	KRH09088	AT5G52200.1	21798944
AT3G05580.1	KRH35346	AT5G52200.1	21798944
AT3G05580.1	KRH38536	AT5G52200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G05580.1	Thale cress	cytosol	87.35	88.99
CDX80617	Canola	cytosol	87.04	88.4
Bra009941.1-P	Field mustard	cytosol	86.73	88.09
VIT_14s0060g01750.t01	Wine grape	cytosol	87.35	87.08
CDY05182	Canola	cytosol	86.11	86.92
CDY27754	Canola	cytosol	86.11	86.92
Bra001155.1-P	Field mustard	cytosol	85.19	86.79
CDY18815	Canola	cytosol	85.19	86.79
CDY25019	Canola	cytosol	85.19	86.79
CDX86135	Canola	cytosol	67.9	86.61
Bra039424.1-P	Field mustard	cytosol	85.8	86.6
CDY05560	Canola	cytosol	84.88	86.48
Bra040535.1-P	Field mustard	cytosol	84.26	85.85
Solyc01g099860.2.1	Tomato	cytosol, unclear	83.02	85.4
PGSC0003DMT400063710	Potato	cytosol	83.02	85.4
KRG96778	Soybean	nucleus	98.77	85.33
AT5G27840.4	Thale cress	cytosol	86.42	84.85
Bra020573.1-P	Field mustard	cytosol	83.64	78.78
CDY40717	Canola	cytosol	85.8	76.37
KRH15048	Soybean	cytosol	73.46	75.56
GSMUA_Achr11P...	Banana	cytosol	73.15	75.0
KRH73092	Soybean	cytosol, nucleus	72.53	74.37
CDX74139	Canola	cytosol	85.8	73.94
EES02921	Sorghum	cytosol	73.77	73.54
TraesCS1A01G095500.1	Wheat	cytosol	73.15	72.92
TraesCS1B01G128100.1	Wheat	cytosol	73.15	72.92
TraesCS1D01G104400.1	Wheat	cytosol	73.15	72.92
KRH68801	Soybean	cytosol, endoplasmic reticulum	72.53	72.76
Os01t0349400-01	Rice	cytosol	72.84	72.62
GSMUA_Achr2P02240_001	Banana	cytosol	71.91	72.59
KRG92623	Soybean	cytosol, endoplasmic reticulum	72.84	72.39
KRG97050	Soybean	cytosol	72.84	72.39
Zm00001d037601_P001	Maize	cytosol	66.98	72.33
KRH59977	Soybean	nucleus	71.3	71.96
KRH34158	Soybean	cytosol, nucleus	72.22	71.78
HORVU1Hr1G022370.5	Barley	cytosol	72.22	71.78
KRH41246	Soybean	nucleus	70.99	71.65
TraesCS3D01G199300.1	Wheat	cytosol	71.6	71.38
KRH51761	Soybean	cytosol, nucleus	66.36	71.19
GSMUA_Achr8P06590_001	Banana	cytosol	61.11	70.71
KRG92313	Soybean	cytosol, nucleus	70.99	69.7
Zm00001d009844_P001	Maize	cytosol	72.53	69.53
KRH69127	Soybean	cytosol	68.21	69.28
GSMUA_Achr11P...	Banana	cytosol	74.07	67.99
TraesCS3A01G195500.1	Wheat	cytosol	71.6	67.05
KRH31706	Soybean	cytosol	69.75	66.86
TraesCS3B01G226800.1	Wheat	cytosol	71.3	66.0
KRH34478	Soybean	cytosol	70.06	65.8
HORVU3Hr1G044550.3	Barley	cytosol	56.79	61.54
Zm00001d009181_P005	Maize	cytosol	61.11	53.8
OQU77459	Sorghum	cytosol	72.84	49.68
KRG99209	Soybean	cytosol, nucleus	43.52	46.08
KRH45793	Soybean	cytosol, nucleus	43.52	46.08
KRH69421	Soybean	cytosol, nucleus	43.21	45.75
KRH14305	Soybean	cytosol	42.9	45.13
KRH73826	Soybean	cytosol	42.9	45.13
KRH74722	Soybean	cytosol, nucleus	42.59	45.1
KRH68078	Soybean	cytosol	42.9	44.41
KRG96343	Soybean	cytosol	42.9	44.41
KRH58904	Soybean	cytosol	42.59	44.37
KRH42814	Soybean	cytosol	42.59	44.37
KRH38026	Soybean	cytosol	42.9	44.27
KRH71796	Soybean	cytosol	42.9	44.27
KRH36174	Soybean	cytosol, nucleus	39.81	42.57
KRH36176	Soybean	cytosol	39.81	42.57
KRG90576	Soybean	cytosol, nucleus	39.81	42.57
KRH40922	Soybean	cytosol	37.65	39.74

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100805030	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02002118
InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_03G234700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	UniProt:I1JR93	InterPro:IPR029052	EnsemblPlants:KRH68493	ProteinID:KRH68493
ProteinID:KRH68493.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF262	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
UniParc:UPI000233A1AB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:43505961..43508965

Molecular Weight (calculated)

36646.3 Da

IEP (calculated)

5.015

GRAVY (calculated)

-0.180

Length

324 amino acids

Sequence
(BLAST)

001: MMMMTMEGMM DKGVLDDVIR RLLEGKGGKQ VQLSESEIRQ LCVNARQIFL SQPILLDLRA PIRVCGDIHG QYQDLLRLFE YGGYPPAANY LFLGDYVDRG
101: KQSLETICLL LAYKIRYPDK IYLLRGNHEE AKINRIYGFY DECKRRFNVR LWKIFTDCFN CLPVAALIDE KILCMHGGLS PELQNLDQIR EIQRPTEIPD
201: NGLLCDLLWS DPDASIEGWA ESDRGVSCTF GADVVAEFLD KNDLDLVCRG HQVVEDGYEF FAKRRLVTIF SAPNYGGEFD NAGALLSVDD SLVCSFEILK
301: PADRASGSGS SKMNFKKPPK LGKI

Best Arabidopsis Sequence Match ( AT5G27840.1 )
(BLAST)

001: MMTSMEGMVE KGVLDDIIRR LLEGKGGKQV QLSESEIRQL CFNARQIFLS QPNLLDLHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI YLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKVFTDCFNC LPVAALIDEK ILCMHGGLSP DLDNLNQIRE IQRPIEIPDS
201: GLLCDLLWSD PDQKIEGWAD SDRGISCTFG ADKVAEFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDES LVCSFEIMKP
301: APASSSHPLK KVPKMGKS

Arabidopsis Description

TOPP8Calcineurin-like metallo-phosphoesterase superfamily protein [Source:TAIR;Acc:AT5G27840]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.