CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH23958
KRH39841
KRH57716
KRH64894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50370.1	KRG94206	AT3G56850.1	23404889
AT1G50370.1	KRG94991	AT3G56850.1	23404889
AT1G50370.1	KRH57716	AT3G56850.1	23404889
AT1G50370.1	KRH64894	AT3G56850.1	23404889
AT1G50370.1	KRH23958	AT4G25200.1	21798944
AT1G50370.1	KRH39841	AT4G25200.1	21798944
AT3G19980.1	KRG94206	AT3G56850.1	23404889
AT3G19980.1	KRG94991	AT3G56850.1	23404889
AT3G19980.1	KRH57716	AT3G56850.1	23404889
AT3G19980.1	KRH64894	AT3G56850.1	23404889

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36174	Soybean	cytosol, nucleus	99.67	99.67
VIT_10s0071g00950.t01	Wine grape	cytosol	99.34	99.34
KRH36176	Soybean	cytosol	99.34	99.34
Solyc06g072140.2.1	Tomato	cytosol	97.69	97.69
PGSC0003DMT400039336	Potato	cytosol	97.69	97.69
AT1G50370.1	Thale cress	cytosol	97.36	97.36
Solyc03g019900.2.1	Tomato	cytosol	97.36	97.36
GSMUA_AchrUn_...	Banana	cytosol	97.36	97.36
AT3G19980.1	Thale cress	cytosol	97.03	97.03
GSMUA_Achr9P21520_001	Banana	cytosol	96.04	96.36
CDY25366	Canola	cytosol	95.38	95.38
CDY33438	Canola	cytosol	95.05	95.05
CDY70204	Canola	cytosol	95.05	95.05
Bra038247.1-P	Field mustard	cytosol	95.05	95.05
CDY24572	Canola	cytosol	94.72	94.72
Os01t0691700-01	Rice	cytosol, plasma membrane	94.72	94.72
Bra001770.1-P	Field mustard	cytosol	94.39	94.39
CDX82268	Canola	cytosol	94.39	94.39
TraesCS3D01G261300.1	Wheat	cytosol	94.06	94.06
TraesCS3B01G294200.1	Wheat	cytosol, golgi, plastid	94.06	94.06
TraesCS3A01G261200.1	Wheat	cytosol	94.06	94.06
HORVU3Hr1G064290.2	Barley	cytosol	94.06	94.06
Bra027930.1-P	Field mustard	cytosol	57.76	93.58
Zm00001d011634_P003	Maize	cytosol	92.41	92.41
EES01303	Sorghum	cytosol	92.41	92.41
CDY69052	Canola	cytosol	95.71	92.36
TraesCS1D01G380200.1	Wheat	cytosol	90.76	90.76
KRH40922	Soybean	cytosol	90.76	89.58
PGSC0003DMT400069607	Potato	cytosol	97.36	88.06
CDY03595	Canola	cytosol	95.71	87.61
TraesCS1B01G393500.1	Wheat	cytosol	86.47	85.9
Bra035830.1-P	Field mustard	cytosol	94.72	85.16
Bra014246.1-P	Field mustard	cytosol	96.04	83.86
HORVU1Hr1G083000.1	Barley	cytosol	91.09	77.31
TraesCS1A01G373300.1	Wheat	cytosol	90.76	76.82
KRH14305	Soybean	cytosol	59.74	58.77
KRH73826	Soybean	cytosol	59.74	58.77
KRH45793	Soybean	cytosol, nucleus	56.44	55.88
KRH69421	Soybean	cytosol, nucleus	56.44	55.88
KRG99209	Soybean	cytosol, nucleus	56.11	55.56
KRH74722	Soybean	cytosol, nucleus	55.78	55.23
KRH58904	Soybean	cytosol	56.44	54.98
KRH42814	Soybean	cytosol	56.44	54.98
KRH38026	Soybean	cytosol	56.11	54.14
KRH71796	Soybean	cytosol	56.11	54.14
KRH68078	Soybean	cytosol	55.78	53.99
KRG96343	Soybean	cytosol	55.78	53.99
KRH68493	Soybean	cytosol	42.57	39.81
KRH15048	Soybean	cytosol	40.92	39.37
KRH51761	Soybean	cytosol, nucleus	38.94	39.07
CDY36067	Canola	plasma membrane	94.39	38.96
KRH73092	Soybean	cytosol, nucleus	40.59	38.92
KRH69127	Soybean	cytosol	39.6	37.62
KRH68801	Soybean	cytosol, endoplasmic reticulum	39.93	37.46
KRH34158	Soybean	cytosol, nucleus	40.26	37.42
KRG97050	Soybean	cytosol	39.93	37.12
KRH59977	Soybean	nucleus	39.27	37.07
KRG92623	Soybean	cytosol, endoplasmic reticulum	39.6	36.81
KRH41246	Soybean	nucleus	38.94	36.76
KRG92313	Soybean	cytosol, nucleus	38.94	35.76
KRH31706	Soybean	cytosol	39.6	35.5
KRH34478	Soybean	cytosol	39.27	34.49
KRG96778	Soybean	nucleus	41.91	33.87

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100820006	MapMan:18.4.24.1.5	Gene3D:3.60.21.10	EMBL:ACUP02012626
EMBL:BT098032	UniProt:C6TK28	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_20G100200	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR029052	EnsemblPlants:KRG90576	ProteinID:KRG90576	ProteinID:KRG90576.1
InterPro:Metallo-depent_PP-like	PFAM:PF00149	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF400
SMART:SM00156	SUPFAM:SSF56300	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0000F0395F	:	:

Description

hypothetical protein

Coordinates

chr20:-:34328421..34334909

Molecular Weight (calculated)

34873.4 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.271

Length

303 amino acids

Sequence
(BLAST)

001: MDLDQWISKV KEGQHLLEDE LQLLCEYVKE ILIEESNVQP VNSPVTVCGD IHGQFHDLMK LFQTGGHVPE TNYIFMGDFV DRGYNSLEVF TILLLLKARY
101: PANITLLRGN HESRQLTQVY GFYDECQRKY GNANAWRYCT DVFDYLTLSA IIDGTVLCVH GGLSPDIRTI DQIRVIDRNC EIPHEGPFCD LMWSDPEDIE
201: TWAVSPRGAG WLFGSRVTSE FNHINNLDLV CRAHQLVQEG LKYMFQDKGL VTVWSAPNYC YRCGNVASIL SFNENMEREV KFFTETEENN QMRGPRTGVP
301: YFL

Best Arabidopsis Sequence Match ( AT1G50370.1 )
(BLAST)

001: MDLDQWISKV KDGQHLSEDE LQLLCEYVKE ILIEESNVQP VNSPVTVCGD IHGQFHDLMK LFQTGGHVPE TNYIFMGDFV DRGYNSLEVF TILLLLKARH
101: PANITLLRGN HESRQLTQVY GFYDECQRKY GNANAWRYCT DVFDYLTLSA IIDGTVLCVH GGLSPDVRTI DQIRLIERNC EIPHEGPFCD LMWSDPEDIE
201: TWAVSPRGAG WLFGSRVTTE FNHINNLDLV CRAHQLVQEG LKYMFQDKGL VTVWSAPNYC YRCGNVASIL SFNDNMEREV KFFTETEENN QMRGPRTGVP
301: YFL

Arabidopsis Description

FYPP1Phytochrome-associated serine/threonine-protein phosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.