CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59977	Soybean	nucleus	97.2	97.2
VIT_02s0025g00480.t01	Wine grape	cytosol	89.1	89.66
Bra035240.1-P	Field mustard	cytosol	85.67	85.94
CDX86799	Canola	cytosol	85.67	85.94
GSMUA_Achr2P15380_001	Banana	cytosol	84.74	85.27
AT4G11240.1	Thale cress	cytosol	85.36	85.09
CDY13242	Canola	cytosol	84.74	85.0
HORVU7Hr1G026400.1	Barley	cytosol	84.11	84.11
GSMUA_Achr10P...	Banana	cytosol	83.49	83.75
TraesCS7D01G124400.1	Wheat	cytosol	83.18	83.18
TraesCS7B01G025800.1	Wheat	cytosol	83.18	83.18
TraesCS7A01G126500.1	Wheat	cytosol	83.18	83.18
CDX90793	Canola	cytosol	83.18	82.92
CDY05136	Canola	cytosol	83.18	82.92
Bra000740.1-P	Field mustard	cytosol	82.87	82.87
Os06t0164100-02	Rice	cytosol, nucleus, plasma membrane	82.87	82.61
KRG97050	Soybean	cytosol	81.62	80.37
KRH68801	Soybean	cytosol, endoplasmic reticulum	80.69	80.19
Zm00001d045213_P004	Maize	cytosol	80.37	79.63
EER89259	Sorghum	cytosol	80.06	79.32
Zm00001d036285_P001	Maize	cytosol, extracellular	80.06	79.32
KRG92623	Soybean	cytosol, endoplasmic reticulum	80.37	79.14
KRH34158	Soybean	cytosol, nucleus	80.06	78.83
KRH73092	Soybean	cytosol, nucleus	76.32	77.53
KRH15048	Soybean	cytosol	76.01	77.46
KRH51761	Soybean	cytosol, nucleus	70.72	75.17
KRG92313	Soybean	cytosol, nucleus	76.95	74.85
KRH69127	Soybean	cytosol	73.21	73.67
GSMUA_Achr7P10840_001	Banana	cytosol	72.9	73.12
KRH68493	Soybean	cytosol	71.65	70.99
KRH34478	Soybean	cytosol	75.7	70.43
KRH31706	Soybean	cytosol	74.14	70.41
KRG96778	Soybean	nucleus	71.65	61.33
GSMUA_Achr4P31160_001	Banana	cytosol	82.55	61.2
KRH68078	Soybean	cytosol	42.06	43.13
KRG96343	Soybean	cytosol	42.06	43.13
KRH58904	Soybean	cytosol	41.43	42.77
KRH42814	Soybean	cytosol	41.43	42.77
KRH69421	Soybean	cytosol, nucleus	40.5	42.48
KRH74722	Soybean	cytosol, nucleus	40.5	42.48
KRH71796	Soybean	cytosol	41.12	42.04
KRH38026	Soybean	cytosol	41.12	42.04
KRH73826	Soybean	cytosol	40.19	41.88
KRH14305	Soybean	cytosol	40.19	41.88
KRG99209	Soybean	cytosol, nucleus	39.88	41.83
KRH45793	Soybean	cytosol, nucleus	39.88	41.83
KRG90576	Soybean	cytosol, nucleus	36.76	38.94
KRH36176	Soybean	cytosol	36.76	38.94
KRH36174	Soybean	cytosol, nucleus	36.76	38.94
KRH40922	Soybean	cytosol	34.58	36.16

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100790490	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02004755
InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_08G018500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	UniProt:I1KPF7	InterPro:IPR029052	EnsemblPlants:KRH41246	ProteinID:KRH41246
ProteinID:KRH41246.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF294	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
UniParc:UPI0002338FD3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:1497815..1502296

Molecular Weight (calculated)

36349.5 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.288

Length

321 amino acids

Sequence
(BLAST)

001: MDENVLDDII RRLLAAKNGR TTKQVLLTEA EIRQLCVSSK EIFLSQPNLL ELEAPIKICG DVHGQYSDLL RLFEYGGYPP EANYLFLGDY VDRGKQSIET
101: ICLLLAYKIK YKENFFLLRG NHECASINRI YGFYDECKRR FNIRLWKTFT DCFNCLPVAA LVDEKILCMH GGLSPDLKHL DQIRSIARPI DVPDHGLLCD
201: LLWADPDKDL DGWGENDRGV SFTFGADKVA EFLEHHDLDL ICRAHQVVED GYEFFAKRQL VTIFSAPNYC GEFDNAGAMM SVDDTLTCSF QILKSSEKKG
301: KCGFGNNTSR PGTPPHKGGK N

Best Arabidopsis Sequence Match ( AT4G11240.1 )
(BLAST)

001: MDETLLDDII RRLLATNNGR TVKQAQITET EIRQLCLASK EVFLSQPNLL ELEAPIKICG DVHGQFPDLL RLFEYGGYPP AANYLFLGDY VDRGKQSIET
101: ICLLLAYKVK YKFNFFLLRG NHECASINRV YGFYDECKRR YNVRLWKTFT ECFNCLPVSA LIDDKILCMH GGLSPDIKSL DDIRRIPRPI DVPDQGILCD
201: LLWADPDREI QGWGENDRGV SYTFGADKVA EFLQTHDLDL ICRAHQVVED GYEFFAKRQL VTIFSAPNYC GEFDNAGALM SVDDSLTCSF QILKASEKKG
301: RFGFNNNVPR PGTPPHKGGK GR

Arabidopsis Description

TOPP6Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178V1Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.