CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34158	Soybean	cytosol, nucleus	98.16	98.16
KRG97050	Soybean	cytosol	94.48	94.48
KRH68801	Soybean	cytosol, endoplasmic reticulum	92.94	93.81
Solyc05g055060.2.1	Tomato	cytosol, nucleus	87.73	88.0
GSMUA_Achr4P29300_001	Banana	cytosol	84.36	86.48
GSMUA_Achr4P25210_001	Banana	cytosol	84.05	85.89
GSMUA_Achr1P01390_001	Banana	cytosol	86.5	85.71
GSMUA_Achr11P...	Banana	cytosol	85.58	85.58
KRH73092	Soybean	cytosol, nucleus	81.6	84.18
KRH15048	Soybean	cytosol	81.29	84.13
KRG92313	Soybean	cytosol, nucleus	82.82	81.82
KRH59977	Soybean	nucleus	79.75	81.0
KRH69127	Soybean	cytosol	78.83	80.56
KRH41246	Soybean	nucleus	79.14	80.37
VIT_14s0036g00370.t01	Wine grape	cytosol	87.73	78.79
KRH31706	Soybean	cytosol	80.37	77.51
KRH51761	Soybean	cytosol, nucleus	71.78	77.48
KRH34478	Soybean	cytosol	81.9	77.39
KRH68493	Soybean	cytosol	72.39	72.84
PGSC0003DMT400060162	Potato	cytosol	87.73	69.25
KRG96778	Soybean	nucleus	72.39	62.93
KRH68078	Soybean	cytosol	42.33	44.09
KRG96343	Soybean	cytosol	42.33	44.09
KRH45793	Soybean	cytosol, nucleus	41.1	43.79
KRG99209	Soybean	cytosol, nucleus	41.1	43.79
KRH14305	Soybean	cytosol	41.1	43.51
KRH73826	Soybean	cytosol	41.1	43.51
KRH69421	Soybean	cytosol, nucleus	40.8	43.46
KRH74722	Soybean	cytosol, nucleus	40.8	43.46
KRH58904	Soybean	cytosol	41.1	43.09
KRH42814	Soybean	cytosol	41.1	43.09
KRH71796	Soybean	cytosol	41.41	42.99
KRH38026	Soybean	cytosol	41.41	42.99
KRG90576	Soybean	cytosol, nucleus	36.81	39.6
KRH36174	Soybean	cytosol, nucleus	36.81	39.6
KRH36176	Soybean	cytosol	36.81	39.6
KRH40922	Soybean	cytosol	34.97	37.13

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100799218	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02012763
EMBL:BT099450	UniProt:C6TNW7	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_20G222500	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052	EnsemblPlants:KRG92623
ProteinID:KRG92623	ProteinID:KRG92623.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114
ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF390	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N
InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0001B17127	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:45709806..45716414

Molecular Weight (calculated)

36849.3 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.201

Length

326 amino acids

Sequence
(BLAST)

001: MDQALVDDII NRLLEVRGRP GKQVQLSESE IRQLCAASRE IFLQQPNLLE LEAPIKICGD VHGQYSDLLR LFEYGGLPPE ANYLFLGDYV DRGKQSLETI
101: CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF NVRLWKTFTE CFNCLPVAAL IDEKILCMHG GLSPDLLNLD QIRNLQRPTD VPDTGLLCDL
201: LWSDPSKEVQ GWGMNDRGVS YTFGADKVSE FLQKHDLDLI CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPADKKVK
301: LNFGSTTTTK PGNSPAGVKS FLGTKV

Best Arabidopsis Sequence Match ( AT2G29400.1 )
(BLAST)

001: MAEKPAQEQE QKRAMEPAVL DDIIRRLVEF RNTRPGSGKQ VHLSEGEIRQ LCAVSKEIFL QQPNLLELEA PIKICGDIHG QYSDLLRLFE YGGFPPEANY
101: LFLGDYVDRG KQSLETICLL LAYKIKYPEN FFLLRGNHES ASINRIYGFY DECKRRFNVR LWKIFTDCFN CLPVAALIDD RILCMHGGIS PELKSLDQIR
201: NIARPMDIPE SGLVCDLLWS DPSGDVGWGM NDRGVSYTFG ADKVAEFLEK HDMDLICRAH QVVEDGYEFF AERQLVTVFS APNYCGEFDN AGAMMSIDES
301: LMCSFQILKP SEKKSPFL

Arabidopsis Description

TOPP1Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VXL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.