CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92623	Soybean	cytosol, endoplasmic reticulum	98.16	98.16
KRG97050	Soybean	cytosol	94.17	94.17
KRH68801	Soybean	cytosol, endoplasmic reticulum	92.64	93.5
Solyc05g055060.2.1	Tomato	cytosol, nucleus	87.12	87.38
GSMUA_Achr4P29300_001	Banana	cytosol	83.74	85.85
GSMUA_Achr1P01390_001	Banana	cytosol	86.2	85.41
GSMUA_Achr4P25210_001	Banana	cytosol	83.44	85.27
GSMUA_Achr11P...	Banana	cytosol	84.66	84.66
KRH73092	Soybean	cytosol, nucleus	81.29	83.86
KRH15048	Soybean	cytosol	80.98	83.81
KRG92313	Soybean	cytosol, nucleus	82.21	81.21
KRH59977	Soybean	nucleus	79.45	80.69
KRH41246	Soybean	nucleus	78.83	80.06
KRH69127	Soybean	cytosol	78.22	79.94
VIT_14s0036g00370.t01	Wine grape	cytosol	87.12	78.24
KRH51761	Soybean	cytosol, nucleus	72.09	77.81
KRH31706	Soybean	cytosol	79.75	76.92
KRH34478	Soybean	cytosol	80.98	76.52
KRH68493	Soybean	cytosol	71.78	72.22
PGSC0003DMT400060162	Potato	cytosol	87.12	68.77
KRG96778	Soybean	nucleus	71.78	62.4
KRH68078	Soybean	cytosol	42.94	44.73
KRG96343	Soybean	cytosol	42.94	44.73
KRH14305	Soybean	cytosol	41.72	44.16
KRH73826	Soybean	cytosol	41.72	44.16
KRH45793	Soybean	cytosol, nucleus	41.1	43.79
KRG99209	Soybean	cytosol, nucleus	41.1	43.79
KRH58904	Soybean	cytosol	41.72	43.73
KRH42814	Soybean	cytosol	41.72	43.73
KRH71796	Soybean	cytosol	42.02	43.63
KRH38026	Soybean	cytosol	42.02	43.63
KRH69421	Soybean	cytosol, nucleus	40.8	43.46
KRH74722	Soybean	cytosol, nucleus	40.8	43.46
KRG90576	Soybean	cytosol, nucleus	37.42	40.26
KRH36174	Soybean	cytosol, nucleus	37.42	40.26
KRH36176	Soybean	cytosol	37.42	40.26
KRH40922	Soybean	cytosol	35.28	37.46

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100794578	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02006582
InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_10G166700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	UniProt:I1LBR4	InterPro:IPR029052	EnsemblPlants:KRH34158	ProteinID:KRH34158
ProteinID:KRH34158.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF390	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
UniParc:UPI000233CDD2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:40114921..40120839

Molecular Weight (calculated)

36888.3 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.206

Length

326 amino acids

Sequence
(BLAST)

001: MDQALLDDII NRLLEVRSRP GKQVQLSESE IRHLCAASRE IFLQQPNLLE LEAPIKICGD VHGQYSDLLR LFEYGGLPPE ANYLFLGDYV DRGKQSLETI
101: CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF NVRLWKTFTE CFNCLPVAAL IDEKILCMHG GLSPDILNLD QIRNLQRPTD VPDTGLLCDL
201: LWSDPSKEVQ GWGMNDRGVS YTFGADKVSE FLQKHDLDLI CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPADKKAK
301: LNFGSTTTTK PGNSPAGIKS FLGTKV

Best Arabidopsis Sequence Match ( AT2G29400.1 )
(BLAST)

001: MAEKPAQEQE QKRAMEPAVL DDIIRRLVEF RNTRPGSGKQ VHLSEGEIRQ LCAVSKEIFL QQPNLLELEA PIKICGDIHG QYSDLLRLFE YGGFPPEANY
101: LFLGDYVDRG KQSLETICLL LAYKIKYPEN FFLLRGNHES ASINRIYGFY DECKRRFNVR LWKIFTDCFN CLPVAALIDD RILCMHGGIS PELKSLDQIR
201: NIARPMDIPE SGLVCDLLWS DPSGDVGWGM NDRGVSYTFG ADKVAEFLEK HDMDLICRAH QVVEDGYEFF AERQLVTVFS APNYCGEFDN AGAMMSIDES
301: LMCSFQILKP SEKKSPFL

Arabidopsis Description

TOPP1Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VXL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.