CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10430.1	KRH03466	AT3G47620.1	21798944
AT1G10430.1	KRH54542	AT3G47620.1	21798944
AT1G10430.1	KRH56919	AT3G47620.1	21798944
AT1G10430.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45793	Soybean	cytosol, nucleus	99.35	99.35
KRH69421	Soybean	cytosol, nucleus	97.71	97.71
Solyc01g011340.2.1	Tomato	cytosol, plastid	97.06	97.06
PGSC0003DMT400013570	Potato	cytosol	97.06	97.06
KRH74722	Soybean	cytosol, nucleus	97.06	97.06
Solyc05g006590.2.1	Tomato	cytosol	96.41	96.41
VIT_01s0026g01080.t01	Wine grape	cytosol	96.41	96.41
PGSC0003DMT400058216	Potato	cytosol	95.75	95.75
PGSC0003DMT400004853	Potato	cytosol	95.1	95.1
EER88560	Sorghum	cytosol	95.1	95.1
AT1G10430.1	Thale cress	cytosol	94.44	94.44
GSMUA_Achr7P23950_001	Banana	cytosol	94.12	94.12
EES06511	Sorghum	cytosol	94.12	94.12
CDY34892	Canola	cytosol	94.12	94.12
CDY07799	Canola	cytosol	94.12	94.12
Bra031712.1-P	Field mustard	cytosol	93.79	93.79
Zm00001d046369_P002	Maize	cytosol	93.79	93.79
Os02t0217600-02	Rice	cytosol, plasma membrane	93.79	93.49
CDX93426	Canola	cytosol	93.46	93.46
CDY37977	Canola	cytosol	93.46	93.46
Os06t0574500-01	Rice	cytosol, plasma membrane	93.46	93.46
Bra019934.1-P	Field mustard	cytosol	93.14	93.14
HORVU7Hr1G086410.1	Barley	cytosol	92.81	92.81
CDY30909	Canola	cytosol	92.81	92.81
TraesCS7D01G358600.1	Wheat	cytosol	92.81	92.81
TraesCS7B01G263500.1	Wheat	cytosol	92.48	92.48
TraesCS6D01G171400.1	Wheat	cytosol	92.48	92.48
TraesCS6B01G213200.1	Wheat	cytosol	92.48	92.48
TraesCS6A01G183700.1	Wheat	cytosol	92.48	92.48
AT1G59830.1	Thale cress	cytosol	92.48	92.48
Bra027833.1-P	Field mustard	cytosol	92.48	92.48
GSMUA_Achr1P11730_001	Banana	cytosol	92.48	92.48
CDY45151	Canola	cytosol	92.48	92.48
TraesCS7A01G364400.1	Wheat	cytosol	92.16	92.46
CDY52461	Canola	cytosol	92.16	92.16
CDY11632	Canola	cytosol	91.83	91.83
Bra016247.1-P	Field mustard	cytosol	91.83	91.83
CDY38778	Canola	cytosol	91.83	91.83
AT1G69960.1	Thale cress	cytosol	91.83	91.53
Zm00001d016378_P002	Maize	cytosol	93.46	84.62
Zm00001d036949_P007	Maize	cytosol	83.66	83.12
KRH42814	Soybean	cytosol	80.39	79.1
KRH58904	Soybean	cytosol	80.39	79.1
KRH71796	Soybean	cytosol	79.08	77.07
KRH68078	Soybean	cytosol	78.76	77.0
KRG96343	Soybean	cytosol	78.76	77.0
KRH38026	Soybean	cytosol	78.76	76.75
HORVU6Hr1G038770.1	Barley	cytosol	92.16	74.02
GSMUA_Achr3P20430_001	Banana	plastid	84.64	73.37
KRH14305	Soybean	cytosol	66.01	65.58
KRH73826	Soybean	cytosol	65.69	65.26
GSMUA_AchrUn_...	Banana	cytosol	93.79	60.55
Zm00001d053589_P001	Maize	cytosol	61.76	60.0
KRH36174	Soybean	cytosol, nucleus	55.88	56.44
KRH36176	Soybean	cytosol	55.88	56.44
KRG90576	Soybean	cytosol, nucleus	55.56	56.11
KRH40922	Soybean	cytosol	52.29	52.12
KRH73092	Soybean	cytosol, nucleus	45.1	43.67
KRH68493	Soybean	cytosol	46.08	43.52
KRH15048	Soybean	cytosol	44.77	43.49
KRH51761	Soybean	cytosol, nucleus	42.48	43.05
KRH69127	Soybean	cytosol	44.12	42.32
KRH68801	Soybean	cytosol, endoplasmic reticulum	44.44	42.11
KRH34158	Soybean	cytosol, nucleus	43.79	41.1
KRG97050	Soybean	cytosol	43.79	41.1
KRG92623	Soybean	cytosol, endoplasmic reticulum	43.79	41.1
KRG92313	Soybean	cytosol, nucleus	43.79	40.61
KRH31706	Soybean	cytosol	44.12	39.94
KRH59977	Soybean	nucleus	41.83	39.88
KRH41246	Soybean	nucleus	41.83	39.88
KRH34478	Soybean	cytosol	43.79	38.84
KRG96778	Soybean	nucleus	45.42	37.07

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100812326	MapMan:13.4.1.2.3	MapMan:18.4.24.1.2.5	Gene3D:3.60.21.10
EMBL:ACUP02011002	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_18G129700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	UniProt:I1N1B4	InterPro:IPR029052	EnsemblPlants:KRG99209	ProteinID:KRG99209	ProteinID:KRG99209.1
InterPro:Metallo-depent_PP-like	PFAM:PF00149	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF384
SMART:SM00156	SUPFAM:SSF56300	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0000F03963	:	:

Description

hypothetical protein

Coordinates

chr18:+:17683712..17692627

Molecular Weight (calculated)

34997.5 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.295

Length

306 amino acids

Sequence
(BLAST)

001: MPSHADLERQ IEQLMDCKPL SESEVKALCD QARTILVEEW NVQPVKCPVT VCGDIHGQFY DLIELFRIGG NAPDTNYLFM GDYVDRGYYS VETVTLLVAL
101: KVRYRDRITI LRGNHESRQI TQVYGFYDEC LRKYGNANVW KYFTDLFDYL PLTALIESQI FCLHGGLSPS LDTLDNIRAL DRIQEVPHEG PMCDLLWSDP
201: DDRCGWGISP RGAGYTFGQD IAAQFNHTNG LSLISRAHQL VMEGFNWCQD KNVVTVFSAP NYCYRCGNMA AILEIGENMD QNFLQFDPAP RQIEPDTTRK
301: TPDYFL

Best Arabidopsis Sequence Match ( AT1G10430.1 )
(BLAST)

001: MPSNGDLDRQ IEQLMECKPL SEADVRTLCD QARAILVEEY NVQPVKCPVT VCGDIHGQFY DLIELFRIGG NAPDTNYLFM GDYVDRGYYS VETVSLLVAL
101: KVRYRDRLTI LRGNHESRQI TQVYGFYDEC LRKYGNANVW KYFTDLFDYL PLTALIESQV FCLHGGLSPS LDTLDNIRSL DRIQEVPHEG PMCDLLWSDP
201: DDRCGWGISP RGAGYTFGQD IAAQFNHNNG LSLISRAHQL VMEGFNWCQD KNVVTVFSAP NYCYRCGNMA AILEIGENME QNFLQFDPAP RQVEPDTTRK
301: TPDYFL

Arabidopsis Description

PP2A2Serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q07098]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.