Factsheet for Solyc01g011340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10430.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013570	Potato	cytosol	100.0	100.0
Solyc05g006590.2.1	Tomato	cytosol	98.04	98.04
KRH45793	Soybean	cytosol, nucleus	97.71	97.71
KRH69421	Soybean	cytosol, nucleus	97.39	97.39
KRH74722	Soybean	cytosol, nucleus	97.39	97.39
KRG99209	Soybean	cytosol, nucleus	97.06	97.06
VIT_01s0026g01080.t01	Wine grape	cytosol	96.08	96.08
AT1G10430.1	Thale cress	cytosol	96.08	96.08
CDY07799	Canola	cytosol	95.42	95.42
CDY34892	Canola	cytosol	95.42	95.42
CDY37977	Canola	cytosol	95.1	95.1
CDX93426	Canola	cytosol	95.1	95.1
Bra031712.1-P	Field mustard	cytosol	95.1	95.1
Bra019934.1-P	Field mustard	cytosol	94.77	94.77
CDY30909	Canola	cytosol	94.44	94.44
EER88560	Sorghum	cytosol	94.44	94.44
GSMUA_Achr7P23950_001	Banana	cytosol	94.44	94.44
Os06t0574500-01	Rice	cytosol, plasma membrane	94.12	94.12
AT1G59830.1	Thale cress	cytosol	94.12	94.12
CDY45151	Canola	cytosol	93.79	93.79
Bra027833.1-P	Field mustard	cytosol	93.79	93.79
Zm00001d046369_P002	Maize	cytosol	93.79	93.79
EES06511	Sorghum	cytosol	93.46	93.46
Os02t0217600-02	Rice	cytosol, plasma membrane	93.46	93.16
GSMUA_Achr1P11730_001	Banana	cytosol	93.14	93.14
TraesCS6B01G213200.1	Wheat	cytosol	92.81	92.81
TraesCS6A01G183700.1	Wheat	cytosol	92.81	92.81
TraesCS6D01G171400.1	Wheat	cytosol	92.81	92.81
CDY52461	Canola	cytosol	92.81	92.81
CDY38778	Canola	cytosol	92.48	92.48
Bra016247.1-P	Field mustard	cytosol	92.48	92.48
CDY11632	Canola	cytosol	92.48	92.48
TraesCS7D01G358600.1	Wheat	cytosol	92.16	92.16
HORVU7Hr1G086410.1	Barley	cytosol	92.16	92.16
TraesCS7B01G263500.1	Wheat	cytosol	91.83	91.83
TraesCS7A01G364400.1	Wheat	cytosol	91.5	91.8
AT1G69960.1	Thale cress	cytosol	91.18	90.88
Zm00001d016378_P002	Maize	cytosol	92.81	84.02
Zm00001d036949_P007	Maize	cytosol	83.33	82.79
Solyc01g005950.2.1	Tomato	cytosol, extracellular	80.07	78.27
Solyc01g034020.2.1	Tomato	cytosol	78.1	78.1
Solyc01g073650.2.1	Tomato	cytosol	79.08	77.56
HORVU6Hr1G038770.1	Barley	cytosol	92.48	74.28
GSMUA_Achr3P20430_001	Banana	plastid	85.29	73.94
Solyc07g065020.2.1	Tomato	cytosol	66.01	66.23
GSMUA_AchrUn_...	Banana	cytosol	94.44	60.97
Zm00001d053589_P001	Maize	cytosol	62.09	60.32
Solyc03g019900.2.1	Tomato	cytosol	56.86	57.43
Solyc06g072140.2.1	Tomato	cytosol	55.88	56.44
Solyc06g030490.2.1	Tomato	cytosol	45.42	45.72
Solyc06g076430.2.1	Tomato	cytosol, nucleus	46.08	45.48
Solyc01g099860.2.1	Tomato	cytosol, unclear	45.75	44.44
Solyc05g055060.2.1	Tomato	cytosol, nucleus	45.1	42.46
Solyc06g005800.2.1	Tomato	cytosol, nucleus	44.12	42.32
Solyc06g053630.2.1	Tomato	cytosol	44.44	42.24
Solyc09g090060.2.1	Tomato	cytosol	43.46	40.3

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:13.4.1.2.3	MapMan:18.4.24.1.2.5	Gene3D:3.60.21.10	EMBL:AY325818
InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR029052
InterPro:Metallo-depent_PP-like	PFAM:PF00149	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF384
UniProt:Q6VUQ5	SMART:SM00156	SUPFAM:SSF56300	InterPro:Ser/Thr-sp_prot-phosphatase	EnsemblPlantsGene:Solyc01g011340.2	EnsemblPlants:Solyc01g011340.2.1
UniParc:UPI000035E292	:	:	:	:	:

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:Q6VUQ5]

Coordinates

chr1:+:8677842..8684080

Molecular Weight (calculated)

35011.5 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.295

Length

306 amino acids

Sequence
(BLAST)

001: MPSHADLDRQ IEQLMECKPL SEADVKTLCD QARAILVEEW NVQPVKCPVT VCGDIHGQFY DLIELFRIGG NAPDTNYLFM GDYVDRGYYS VETVTLLVAL
101: KVRYRDRITI LRGNHESRQI TQVYGFYDEC LRKYGNANVW KYFTDLFDYL PLTALIESQI FCLHGGLSPS LDTLDNIRAL DRIQEVPHEG PMCDLLWSDP
201: DDRCGWGISP RGAGYTFGQD IASQFNHTNG LTLISRAHQL VMEGFNWCQD KNVVTVFSAP NYCYRCGNMA AILEIGENME QNFLQFDPAP RQIEPDTTRK
301: TPDYFL

Best Arabidopsis Sequence Match ( AT1G10430.1 )
(BLAST)

001: MPSNGDLDRQ IEQLMECKPL SEADVRTLCD QARAILVEEY NVQPVKCPVT VCGDIHGQFY DLIELFRIGG NAPDTNYLFM GDYVDRGYYS VETVSLLVAL
101: KVRYRDRLTI LRGNHESRQI TQVYGFYDEC LRKYGNANVW KYFTDLFDYL PLTALIESQV FCLHGGLSPS LDTLDNIRSL DRIQEVPHEG PMCDLLWSDP
201: DDRCGWGISP RGAGYTFGQD IAAQFNHNNG LSLISRAHQL VMEGFNWCQD KNVVTVFSAP NYCYRCGNMA AILEIGENME QNFLQFDPAP RQVEPDTTRK
301: TPDYFL

Arabidopsis Description

PP2A2Serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q07098]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.