Factsheet for Solyc05g055060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92623	Soybean	cytosol, endoplasmic reticulum	88.0	87.73
KRG97050	Soybean	cytosol	88.0	87.73
KRH68801	Soybean	cytosol, endoplasmic reticulum	87.08	87.62
KRH34158	Soybean	cytosol, nucleus	87.38	87.12
GSMUA_Achr4P29300_001	Banana	cytosol	84.62	86.48
Solyc06g053630.2.1	Tomato	cytosol	84.92	85.71
GSMUA_Achr4P25210_001	Banana	cytosol	83.69	85.27
Solyc06g030490.2.1	Tomato	cytosol	78.77	84.21
GSMUA_Achr11P...	Banana	cytosol	84.31	84.05
GSMUA_Achr1P01390_001	Banana	cytosol	84.62	83.59
Solyc09g090060.2.1	Tomato	cytosol	84.0	82.73
Solyc06g076430.2.1	Tomato	cytosol, nucleus	78.15	81.94
Solyc06g005800.2.1	Tomato	cytosol, nucleus	76.92	78.37
VIT_14s0036g00370.t01	Wine grape	cytosol	87.08	77.96
PGSC0003DMT400060162	Potato	cytosol	97.54	76.76
Solyc01g099860.2.1	Tomato	cytosol, unclear	69.54	71.75
Solyc07g065020.2.1	Tomato	cytosol	43.69	46.56
Solyc05g006590.2.1	Tomato	cytosol	42.46	45.1
Solyc01g011340.2.1	Tomato	cytosol, plastid	42.46	45.1
Solyc01g073650.2.1	Tomato	cytosol	42.15	43.91
Solyc01g034020.2.1	Tomato	cytosol	41.23	43.79
Solyc01g005950.2.1	Tomato	cytosol, extracellular	42.15	43.77
Solyc06g072140.2.1	Tomato	cytosol	38.46	41.25
Solyc03g019900.2.1	Tomato	cytosol	37.85	40.59

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052
UniProt:K4C2I3	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF390	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
EnsemblPlantsGene:Solyc05g055060.2	EnsemblPlants:Solyc05g055060.2.1	UniParc:UPI0002766EA4	:	:	:

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:K4C2I3]

Coordinates

chr5:-:64849781..64855685

Molecular Weight (calculated)

36737.2 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.196

Length

325 amino acids

Sequence
(BLAST)

001: MDQNVLDDII TRLLEVKGKP GKQVVLTEAE IKQLCMVAKE TFLRQPNLLE LEAPIKICGD IHGQYSDLLR LFEYGGLPPQ SNYLFLGDYV DRGKQSLETI
101: CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF NVRLWKIFTD CFNCLPVAAL IDEKILCMHG GLSPDLNHLD QIRGLQRPTD VPDAGLLCDL
201: LWSDPSKDVQ GWGMNDRGVS YTFGADKVTE FLEKHDLDLI CRAHQVVEDG YEFFANRQLV TVFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPADKKSK
301: FSFGSTTTAK PGSPTGMKSF FNSKA

Best Arabidopsis Sequence Match ( AT2G39840.1 )
(BLAST)

001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I

Arabidopsis Description

TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.