Factsheet for Solyc01g099860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g025980.2.1
Solyc05g005520.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05580.1	Solyc03g025980.2.1	AT5G52200.1	21798944
AT3G05580.1	Solyc05g005520.1.1	AT5G52200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063710	Potato	cytosol	100.0	100.0
AT3G05580.1	Thale cress	cytosol	85.71	84.91
CDX80617	Canola	cytosol	85.08	84.01
Bra001155.1-P	Field mustard	cytosol	84.44	83.65
Bra009941.1-P	Field mustard	cytosol	84.44	83.39
CDY25019	Canola	cytosol	84.13	83.33
KRH68493	Soybean	cytosol	85.4	83.02
CDY18815	Canola	cytosol	83.81	83.02
CDY05560	Canola	cytosol	83.81	83.02
Bra039424.1-P	Field mustard	cytosol	84.44	82.87
CDX86135	Canola	cytosol	66.67	82.68
CDY05182	Canola	cytosol	84.13	82.55
CDY27754	Canola	cytosol	84.13	82.55
Bra040535.1-P	Field mustard	cytosol	83.17	82.39
VIT_14s0060g01750.t01	Wine grape	cytosol	82.86	80.31
AT5G27840.4	Thale cress	cytosol	84.13	80.3
Bra020573.1-P	Field mustard	cytosol	82.86	75.87
CDY40717	Canola	cytosol	85.08	73.63
TraesCS1D01G104400.1	Wheat	cytosol	75.24	72.92
TraesCS1B01G128100.1	Wheat	cytosol	75.24	72.92
TraesCS1A01G095500.1	Wheat	cytosol	75.24	72.92
GSMUA_Achr11P...	Banana	cytosol	73.02	72.78
Solyc06g030490.2.1	Tomato	cytosol	70.16	72.7
Zm00001d037601_P001	Maize	cytosol	68.57	72.0
Os01t0349400-01	Rice	cytosol	74.29	72.0
HORVU1Hr1G022370.5	Barley	cytosol	74.29	71.78
KRG96778	Soybean	nucleus	85.4	71.73
Solyc06g076430.2.1	Tomato	cytosol, nucleus	70.48	71.61
TraesCS3D01G199300.1	Wheat	cytosol	73.65	71.38
EES02921	Sorghum	cytosol	73.02	70.77
CDX74139	Canola	cytosol	84.44	70.74
Solyc06g053630.2.1	Tomato	cytosol	72.06	70.5
GSMUA_Achr2P02240_001	Banana	cytosol	71.11	69.78
Solyc06g005800.2.1	Tomato	cytosol, nucleus	70.48	69.59
Solyc05g055060.2.1	Tomato	cytosol, nucleus	71.75	69.54
Zm00001d009844_P001	Maize	cytosol	74.6	69.53
GSMUA_Achr8P06590_001	Banana	cytosol	60.32	67.86
Solyc09g090060.2.1	Tomato	cytosol	70.48	67.27
TraesCS3A01G195500.1	Wheat	cytosol	73.02	66.47
GSMUA_Achr11P...	Banana	cytosol	74.29	66.29
TraesCS3B01G226800.1	Wheat	cytosol	73.33	66.0
HORVU3Hr1G044550.3	Barley	cytosol	57.78	60.87
Zm00001d009181_P005	Maize	cytosol	61.27	52.45
OQU77459	Sorghum	cytosol	74.92	49.68
Solyc07g065020.2.1	Tomato	cytosol	44.76	46.23
Solyc01g011340.2.1	Tomato	cytosol, plastid	44.44	45.75
Solyc05g006590.2.1	Tomato	cytosol	44.44	45.75
Solyc01g034020.2.1	Tomato	cytosol	43.17	44.44
Solyc01g073650.2.1	Tomato	cytosol	43.17	43.59
Solyc01g005950.2.1	Tomato	cytosol, extracellular	43.17	43.45
Solyc06g072140.2.1	Tomato	cytosol	40.0	41.58
Solyc03g019900.2.1	Tomato	cytosol	39.68	41.25

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052
UniProt:K4B120	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF262	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
EnsemblPlantsGene:Solyc01g099860.2	EnsemblPlants:Solyc01g099860.2.1	UniParc:UPI0002768F74	SEG:seg	:	:

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:K4B120]

Coordinates

chr1:-:89993701..89996439

Molecular Weight (calculated)

35481.0 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.119

Length

315 amino acids

Sequence
(BLAST)

001: MEGLMEKGVL DDIIGRLLEE KGGKQVQLSE AEIRQLCVNA RQIFLSQPNL LRIRAPVRIC GDIHGQFQDL LRLFEYGGYP PSANYLFLGD YVDRGKQSLE
101: TICLLLAYKI RYPDKIFLLR GNHEDAKINR VYGFYDECKR RFNVRLWKIF TDCFNCLPVA ALIDEKILCM HGGISPELKS LDLINEIERP AEIPDGGLLC
201: DLLWADPDPR IKGWSDSDRG VSCTFGPDVV AEFLAKNELD LICRGHQVVE DGYEFFAKRR LVTLFSAPNY GGEFDNAGAL LSVDEQLVCS FEILKPVLSS
301: SSKLPLKKPP KAGGM

Best Arabidopsis Sequence Match ( AT3G05580.1 )
(BLAST)

001: MMTSMEGMME MGVLDDIIRR LLEGKGGKQV QLSEVEIRQL CVNARQIFLS QPNLLELHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI FLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKIFTDCFNC LPVAALIDEK ILCMHGGLSP ELENLGQIRE IQRPTEIPDN
201: GLLCDLLWSD PDQKNEGWTD SDRGISCTFG ADVVADFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDQS LVCSFEILKP
301: APASSTNPLK KVPKMGKS

Arabidopsis Description

TOPP9Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VKY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.