Factsheet for Solyc03g025980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099860.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	Solyc01g099860.2.1	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037153	Potato	nucleus	95.86	93.64
KRH38536	Soybean	nucleus	53.25	51.14
KRH09088	Soybean	nucleus	53.25	50.28
VIT_16s0100g01230.t01	Wine grape	nucleus	53.85	50.28
Os05t0301600-01	Rice	nucleus	45.56	46.67
KXG34763	Sorghum	nucleus	45.56	46.39
TraesCS4A01G246900.1	Wheat	nucleus	45.56	45.83
TraesCS4D01G067000.1	Wheat	nucleus	44.38	44.91
TraesCS4B01G068000.1	Wheat	nucleus	44.38	44.91
KRG91469	Soybean	nucleus	41.42	44.87
HORVU4Hr1G011360.1	Barley	nucleus	43.79	44.05
CDY31914	Canola	nucleus	45.56	44.0
CDY00518	Canola	nucleus	46.15	43.58
CDY38907	Canola	nucleus	46.75	43.17
KRH35346	Soybean	nucleus	39.05	42.31
GSMUA_Achr6P26070_001	Banana	extracellular	45.56	42.08
Bra029133.1-P	Field mustard	nucleus	44.97	41.53
Solyc05g005520.1.1	Tomato	cytosol	36.69	40.79
TraesCS1B01G066300.1	Wheat	nucleus	40.24	40.72
AT5G52200.1	Thale cress	nucleus	45.56	40.31
CDY32592	Canola	extracellular	43.2	37.63
CDX92715	Canola	extracellular	45.56	37.38
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	47.93	33.2
Bra028297.1-P	Field mustard	nucleus	46.75	29.92
Zm00001d046694_P001	Maize	extracellular	2.37	16.67
Zm00001d037594_P001	Maize	extracellular	2.37	16.67
Zm00001d010993_P001	Maize	extracellular	2.37	16.67
Bra019158.1-P	Field mustard	nucleus	43.79	9.48
CDY50200	Canola	nucleus	44.38	9.27

Protein Annotations

MapMan:35.1	GO:GO:0000164	GO:GO:0003674	GO:GO:0004864	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0032515
GO:GO:0043086	GO:GO:0043666	UniProt:K4BF71	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398
PANTHER:PTHR12398:SF24	EnsemblPlantsGene:Solyc03g025980.2	EnsemblPlants:Solyc03g025980.2.1	UniParc:UPI0002768EA4	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:3402975..3407759

Molecular Weight (calculated)

18992.6 Da

IEP (calculated)

5.418

GRAVY (calculated)

-1.305

Length

169 amino acids

Sequence
(BLAST)

001: MKRGHVKWDE ANLGEIEANK PVRQKITEPK TPYHRMIDDD GSLSPKRGSF EEGNGDAVHA EAIRSALNEM ASSSKNKFRR SGWTSSEDET DVMDQDDADS
101: GSRKVKNFKD HRRAHYDEYR RVKELRKKGE EASDDEDLVG NDGRSDSSSS LSAAVKDIEI KEGSMDTSK

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.