Factsheet for Bra028297.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001155.1-P
Bra039424.1-P
Bra040535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	Bra001155.1-P	AT3G05580.1	21798944
AT5G52200.1	Bra039424.1-P	AT3G05580.1	21798944
AT5G52200.1	Bra040535.1-P	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00518	Canola	nucleus	64.39	94.97
CDY31914	Canola	nucleus	62.88	94.86
AT5G52200.1	Thale cress	nucleus	53.79	74.35
Bra029133.1-P	Field mustard	nucleus	48.48	69.95
KRH09088	Soybean	nucleus	34.47	50.84
KRH38536	Soybean	nucleus	33.71	50.57
Os05t0301600-01	Rice	nucleus	30.68	49.09
PGSC0003DMT400037153	Potato	nucleus	31.06	47.4
KXG34763	Sorghum	nucleus	29.55	46.99
Solyc03g025980.2.1	Tomato	nucleus	29.92	46.75
TraesCS4B01G068000.1	Wheat	nucleus	29.17	46.11
TraesCS4D01G067000.1	Wheat	nucleus	29.17	46.11
HORVU4Hr1G011360.1	Barley	nucleus	29.17	45.83
TraesCS4A01G246900.1	Wheat	nucleus	29.17	45.83
PGSC0003DMT400028137	Potato	nucleus	27.27	44.72
TraesCS1B01G066300.1	Wheat	nucleus	27.65	43.71
GSMUA_Achr6P26070_001	Banana	extracellular	29.92	43.17
KRG91469	Soybean	nucleus	25.38	42.95
KRH35346	Soybean	nucleus	24.24	41.03
VIT_02s0025g04180.t01	Wine grape	nucleus	22.73	40.82
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	32.2	34.84
Solyc05g005520.1.1	Tomato	cytosol	19.32	33.55
PGSC0003DMT400079604	Potato	cytosol	19.7	32.5
Bra019158.1-P	Field mustard	nucleus	42.8	14.47
Zm00001d010993_P001	Maize	extracellular	1.14	12.5
Zm00001d037594_P001	Maize	extracellular	1.14	12.5
Zm00001d046694_P001	Maize	extracellular	1.14	12.5

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra028297	EnsemblPlants:Bra028297.1	EnsemblPlants:Bra028297.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0004864	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0032515	GO:GO:0043086
GO:GO:0043666	UniProt:M4EHN2	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398	PANTHER:PTHR12398:SF24
UniParc:UPI00025439C9	SEG:seg	:	:	:	:

Description

AT5G52200 (E=1e-052) | unknown protein

Coordinates

chrA01:+:18815251..18816938

Molecular Weight (calculated)

29839.9 Da

IEP (calculated)

4.694

GRAVY (calculated)

-1.228

Length

264 amino acids

Sequence
(BLAST)

001: MGRSLEKKEG ESHYHPVALS KHDQDKEKLP KIDKISKAEL EDPYMSEEDL EKENERKICC WSSSIRSSSL QKPEFQNYPY SNAFPSRVVR GGRVQWDEAN
101: IVEIESNKPV RQKITEPKTP YHPMIDDDGS LSPRGRSFDE CVDDMQRAEE LRNVLNEAAA SSSRNTSQGS GSGGWSSSEE DEADPMDQDD EDVDGEKNAR
201: FNELRRVHYD EFRKVKEMRS SGSFYEEEEE ENGAKGSKTV ATTSRHTKGV KKEVDAATTA SSSS

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.