Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G067000.1 | Wheat | nucleus | 98.2 | 98.2 |
| TraesCS4A01G246900.1 | Wheat | nucleus | 97.6 | 97.02 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 94.61 | 94.05 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 90.42 | 90.42 |
| Os05t0301600-01 | Rice | nucleus | 74.25 | 75.15 |
| Zm00001d019263_P001 | Maize | nucleus | 73.05 | 73.94 |
| KXG34763 | Sorghum | nucleus | 72.46 | 72.89 |
| VIT_16s0100g01230.t01 | Wine grape | nucleus | 52.69 | 48.62 |
| KRH38536 | Soybean | nucleus | 50.9 | 48.3 |
| KRH09088 | Soybean | nucleus | 49.7 | 46.37 |
| KRG91469 | Soybean | nucleus | 42.52 | 45.51 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 49.7 | 45.36 |
| PGSC0003DMT400037153 | Potato | nucleus | 46.11 | 44.51 |
| Solyc03g025980.2.1 | Tomato | nucleus | 44.91 | 44.38 |
| KRH35346 | Soybean | nucleus | 41.32 | 44.23 |
| PGSC0003DMT400028137 | Potato | nucleus | 41.92 | 43.48 |
| CDY31914 | Canola | nucleus | 44.91 | 42.86 |
| CDY00518 | Canola | nucleus | 45.51 | 42.46 |
| AT5G52200.1 | Thale cress | nucleus | 46.71 | 40.84 |
| CDY38907 | Canola | nucleus | 44.31 | 40.44 |
| Bra029133.1-P | Field mustard | nucleus | 43.71 | 39.89 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 54.49 | 37.3 |
| CDY32592 | Canola | extracellular | 41.92 | 36.08 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 31.74 | 36.05 |
| CDX92715 | Canola | extracellular | 43.71 | 35.44 |
| PGSC0003DMT400079604 | Potato | cytosol | 32.34 | 33.75 |
| Solyc05g005520.1.1 | Tomato | cytosol | 29.94 | 32.89 |
| Bra028297.1-P | Field mustard | nucleus | 46.11 | 29.17 |
| Bra019158.1-P | Field mustard | nucleus | 43.71 | 9.35 |
| CDY50200 | Canola | nucleus | 44.31 | 9.15 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G068000.1 | EnsemblPlantsGene:TraesCS4B01G068000 | GO:GO:0003674 | GO:GO:0004864 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0043666 | InterPro:PPI-2 | PANTHER:PTHR12398 | PANTHER:PTHR12398:SF24 | PFAM:PF04979 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:60426729..60428401
Molecular Weight (calculated)
18675.0 Da
IEP (calculated)
4.401
GRAVY (calculated)
-1.165
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSHRVKWNE DNLYEIESNK PVRQKITEPK TPYHPMMDED GSLSPTRPFD KCLDETVSAE AILTALNGVA SSSKNDSKDD EWASSDDDAD AMEQDGDSEA
101: DRSSVSFKEH RRNHYDEFRK VKELMRTGSL VEDEARANER AANNVEDKTA GEKATGDKSE SSASLQV
101: DRSSVSFKEH RRNHYDEFRK VKELMRTGSL VEDEARANER AANNVEDKTA GEKATGDKSE SSASLQV
001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
Arabidopsis Description
I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.