CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96778
KRH68493

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	KRG96778	AT3G05580.1	21798944
AT5G52200.1	KRH68493	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91469	Soybean	nucleus	85.26	85.26
KRH09088	Soybean	nucleus	60.9	53.07
KRH38536	Soybean	nucleus	55.77	49.43
Os05t0301600-01	Rice	nucleus	44.87	42.42
KXG34763	Sorghum	nucleus	44.23	41.57
VIT_16s0100g01230.t01	Wine grape	nucleus	48.08	41.44
TraesCS4B01G068000.1	Wheat	nucleus	44.23	41.32
TraesCS4D01G067000.1	Wheat	nucleus	44.23	41.32
TraesCS4A01G246900.1	Wheat	nucleus	44.23	41.07
HORVU4Hr1G011360.1	Barley	nucleus	42.31	39.29
Solyc03g025980.2.1	Tomato	nucleus	42.31	39.05
TraesCS1B01G066300.1	Wheat	nucleus	41.67	38.92
GSMUA_Achr6P26070_001	Banana	extracellular	45.51	38.8
PGSC0003DMT400037153	Potato	nucleus	42.95	38.73
CDY31914	Canola	nucleus	41.67	37.14
CDY00518	Canola	nucleus	41.67	36.31
PGSC0003DMT400028137	Potato	nucleus	37.18	36.02
AT5G52200.1	Thale cress	nucleus	42.95	35.08
CDY38907	Canola	nucleus	41.03	34.97
VIT_02s0025g04180.t01	Wine grape	nucleus	32.69	34.69
Solyc05g005520.1.1	Tomato	cytosol	32.69	33.55
Bra029133.1-P	Field mustard	nucleus	39.1	33.33
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	48.72	31.15
CDX92715	Canola	extracellular	41.03	31.07
CDY32592	Canola	extracellular	38.46	30.93
PGSC0003DMT400079604	Potato	cytosol	31.41	30.62
Zm00001d037594_P001	Maize	extracellular	3.85	25.0
Zm00001d010993_P001	Maize	extracellular	3.85	25.0
Zm00001d046694_P001	Maize	extracellular	3.85	25.0
Bra028297.1-P	Field mustard	nucleus	41.03	24.24
Bra019158.1-P	Field mustard	nucleus	38.46	7.68
CDY50200	Canola	nucleus	39.1	7.54

Protein Annotations

MapMan:35.2	EMBL:ACUP02006665	EnsemblPlantsGene:GLYMA_10G237400	GO:GO:0000164	GO:GO:0003674	GO:GO:0004864
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0032515	GO:GO:0043086	GO:GO:0043666	UniProt:I1LDT0	EnsemblPlants:KRH35346
ProteinID:KRH35346	ProteinID:KRH35346.1	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398	UniParc:UPI00023CD319
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:46598519..46600609

Molecular Weight (calculated)

17630.6 Da

IEP (calculated)

4.423

GRAVY (calculated)

-1.571

Length

156 amino acids

Sequence
(BLAST)

001: MKGRVRWNED NIGEIEANKP MRQKITEPKT PYHPMLDDDS SPSPVLGDFD GYNGDKNLSP NAEQTGYNNG AYCSRKGTRQ SDGWTSSEDE AEETEEDEED
101: RSLSFREHRK AHYNEFRKVK ELQQKASLED GSDEDNHAEV ANGEKKNDSS SPTNGT

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.