Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d009181_P005 | |
| Zm00001d009844_P001 | |
| Zm00001d037601_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52200.1 | Zm00001d009181_P005 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | Zm00001d009844_P001 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | Zm00001d037601_P001 | AT3G05580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037594_P001 | Maize | extracellular | 100.0 | 100.0 |
| Zm00001d010993_P001 | Maize | extracellular | 100.0 | 100.0 |
| Zm00001d051007_P001 | Maize | nucleus | 29.17 | 4.9 |
| Solyc05g005520.1.1 | Tomato | cytosol | 25.0 | 3.95 |
| KRH09088 | Soybean | nucleus | 29.17 | 3.91 |
| KRH35346 | Soybean | nucleus | 25.0 | 3.85 |
| KRG91469 | Soybean | nucleus | 25.0 | 3.85 |
| PGSC0003DMT400079604 | Potato | cytosol | 25.0 | 3.75 |
| Zm00001d019263_P001 | Maize | nucleus | 25.0 | 3.64 |
| PGSC0003DMT400028137 | Potato | nucleus | 16.67 | 2.48 |
| Solyc03g025980.2.1 | Tomato | nucleus | 16.67 | 2.37 |
| PGSC0003DMT400037153 | Potato | nucleus | 16.67 | 2.31 |
| KRH38536 | Soybean | nucleus | 16.67 | 2.27 |
| CDY38907 | Canola | nucleus | 16.67 | 2.19 |
| Bra029133.1-P | Field mustard | nucleus | 16.67 | 2.19 |
| AT5G52200.1 | Thale cress | nucleus | 16.67 | 2.09 |
| CDY32592 | Canola | extracellular | 16.67 | 2.06 |
| Zm00001d025415_P001 | Maize | mitochondrion, plastid | 16.67 | 1.85 |
| CDY31914 | Canola | nucleus | 12.5 | 1.71 |
| CDY00518 | Canola | nucleus | 12.5 | 1.68 |
| VIT_16s0100g01230.t01 | Wine grape | nucleus | 12.5 | 1.66 |
| CDX92715 | Canola | extracellular | 12.5 | 1.46 |
| Bra028297.1-P | Field mustard | nucleus | 12.5 | 1.14 |
| Zm00001d004516_P001 | Maize | cytosol | 8.33 | 0.97 |
| Zm00001d018722_P001 | Maize | cytosol | 8.33 | 0.97 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 4.17 | 0.68 |
| Bra019158.1-P | Field mustard | nucleus | 12.5 | 0.38 |
| CDY50200 | Canola | nucleus | 12.5 | 0.37 |
Protein Annotations
| EnsemblPlants:Zm00001d046694_P001 | EnsemblPlants:Zm00001d046694_T001 | EnsemblPlantsGene:Zm00001d046694 | ProteinID:AQK84401.1 | ProteinID:AQK95426.1 | ProteinID:AQL04869.1 |
| SEG:seg | UniParc:UPI000220A8EF | UniProt:K7UJF0 | MapMan:35.2 | : | : |
Description
Peptidase S24/S26A/S26B/S26C family protein
Coordinates
chr9:+:102719162..102719956
Molecular Weight (calculated)
2586.4 Da
IEP (calculated)
9.220
GRAVY (calculated)
0.896
Length
24 amino acids
Sequence
(BLAST)
(BLAST)
1: MTEKPVLKYL LIGALGLLVV ASKE
001: MGWIGETVDS IKSIQIRQLF TQAISLGMIV TSALIIWKAL MCVTGSESPV VVVLSGSMEP GFKRGDILFL HMSKDPIRAG EIVVFNVDGR DIPIVHRVIK
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
101: VHERENTGEV DVLTKGDNNY GDDRLLYAEG QLWLHRHHIM GRAVGFLPYV GWVTIIMTEK PIIKYILIGA LGLLVITSKD
Arabidopsis Description
Signal peptidase I [Source:UniProtKB/TrEMBL;Acc:Q9SSR2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.