CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74139
CDY05182
CDY18815
CDY27754
CDY40717

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	CDX74139	AT3G05580.1	21798944
AT5G52200.1	CDY05182	AT3G05580.1	21798944
AT5G52200.1	CDY18815	AT3G05580.1	21798944
AT5G52200.1	CDY27754	AT3G05580.1	21798944
AT5G52200.1	CDY40717	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00518	Canola	nucleus	98.86	96.65
AT5G52200.1	Thale cress	nucleus	81.14	74.35
CDY38907	Canola	nucleus	73.71	70.49
Bra028297.1-P	Field mustard	nucleus	94.86	62.88
CDY32592	Canola	extracellular	67.43	60.82
CDX92715	Canola	extracellular	63.43	53.88
KRH38536	Soybean	nucleus	50.29	50.0
KRH09088	Soybean	nucleus	50.86	49.72
Os05t0301600-01	Rice	nucleus	45.71	48.48
KXG34763	Sorghum	nucleus	44.57	46.99
PGSC0003DMT400037153	Potato	nucleus	45.71	46.24
Solyc03g025980.2.1	Tomato	nucleus	44.0	45.56
TraesCS4D01G067000.1	Wheat	nucleus	42.86	44.91
TraesCS4B01G068000.1	Wheat	nucleus	42.86	44.91
HORVU4Hr1G011360.1	Barley	nucleus	42.86	44.64
TraesCS4A01G246900.1	Wheat	nucleus	42.86	44.64
PGSC0003DMT400028137	Potato	nucleus	40.0	43.48
TraesCS1B01G066300.1	Wheat	nucleus	40.57	42.52
KRG91469	Soybean	nucleus	37.71	42.31
KRH35346	Soybean	nucleus	37.14	41.67
GSMUA_Achr6P26070_001	Banana	extracellular	43.43	41.53
VIT_02s0025g04180.t01	Wine grape	nucleus	33.14	39.46
Solyc05g005520.1.1	Tomato	cytosol	29.14	33.55
PGSC0003DMT400079604	Potato	cytosol	29.71	32.5
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	44.57	31.97
CDY50200	Canola	nucleus	64.0	13.84
Zm00001d010993_P001	Maize	extracellular	1.71	12.5
Zm00001d037594_P001	Maize	extracellular	1.71	12.5
Zm00001d046694_P001	Maize	extracellular	1.71	12.5

Protein Annotations

MapMan:35.1	GO:A0A078H3C9	UniProt:A0A078H3C9	EnsemblPlants:CDY31914	ProteinID:CDY31914	ProteinID:CDY31914.1
GO:GO:0003674	GO:GO:0004864	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0032515
GO:GO:0043086	GO:GO:0043666	EnsemblPlantsGene:GSBRNA2T00050670001	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398
PANTHER:PTHR12398:SF24	UniParc:UPI0004EC7526	SEG:seg	:	:	:

Description

BnaC09g28300DBnaC09g28300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3C9]

Coordinates

chrLK032282:+:198628..200466

Molecular Weight (calculated)

19585.0 Da

IEP (calculated)

4.401

GRAVY (calculated)

-1.271

Length

175 amino acids

Sequence
(BLAST)

001: MADSKKGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMI DDDGSLSPRG RSFDECVDDM QRTEELRNVL NEAAASSSRN TSQGSGSGGW SSSEEDEADP
101: MDQDDEDVDG EKNARFNELR RVHYDEFRKV KEMRSSGSFY EEEEEDDGAK GSKTVATTSR HTKGVKKEVD AATTA

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.