Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52200.1 | CDX74139 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY05182 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY18815 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY27754 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY40717 | AT3G05580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38907 | Canola | nucleus | 76.8 | 81.42 |
| CDY31914 | Canola | nucleus | 60.82 | 67.43 |
| CDY00518 | Canola | nucleus | 61.86 | 67.04 |
| AT5G52200.1 | Thale cress | nucleus | 58.25 | 59.16 |
| CDX92715 | Canola | extracellular | 51.03 | 48.06 |
| KRH38536 | Soybean | nucleus | 43.3 | 47.73 |
| KRH09088 | Soybean | nucleus | 42.78 | 46.37 |
| PGSC0003DMT400037153 | Potato | nucleus | 40.72 | 45.66 |
| Os05t0301600-01 | Rice | nucleus | 38.14 | 44.85 |
| KXG34763 | Sorghum | nucleus | 38.14 | 44.58 |
| PGSC0003DMT400028137 | Potato | nucleus | 36.6 | 44.1 |
| Solyc03g025980.2.1 | Tomato | nucleus | 37.63 | 43.2 |
| KRG91469 | Soybean | nucleus | 34.02 | 42.31 |
| TraesCS4D01G067000.1 | Wheat | nucleus | 36.08 | 41.92 |
| TraesCS4B01G068000.1 | Wheat | nucleus | 36.08 | 41.92 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 36.08 | 41.67 |
| TraesCS4A01G246900.1 | Wheat | nucleus | 36.08 | 41.67 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 38.66 | 40.98 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 35.05 | 40.72 |
| KRH35346 | Soybean | nucleus | 30.93 | 38.46 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 27.32 | 36.05 |
| Solyc05g005520.1.1 | Tomato | cytosol | 26.8 | 34.21 |
| PGSC0003DMT400079604 | Potato | cytosol | 27.84 | 33.75 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 41.75 | 33.2 |
| Zm00001d010993_P001 | Maize | extracellular | 2.06 | 16.67 |
| Zm00001d037594_P001 | Maize | extracellular | 2.06 | 16.67 |
| Zm00001d046694_P001 | Maize | extracellular | 2.06 | 16.67 |
| CDY50200 | Canola | nucleus | 50.0 | 11.99 |
Protein Annotations
| MapMan:35.1 | GO:A0A078H576 | UniProt:A0A078H576 | EnsemblPlants:CDY32592 | ProteinID:CDY32592 | ProteinID:CDY32592.1 |
| GO:GO:0003674 | GO:GO:0004864 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0032515 |
| GO:GO:0043086 | GO:GO:0043666 | EnsemblPlantsGene:GSBRNA2T00052608001 | PFAM:PF04979 | InterPro:PPI-2 | PANTHER:PTHR12398 |
| PANTHER:PTHR12398:SF20 | SignalP:SignalP-noTM | UniParc:UPI0004EDC3E9 | SEG:seg | : | : |
Description
BnaC03g15600DBnaC03g15600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H576]
Coordinates
chrLK032297:+:55102..56809
Molecular Weight (calculated)
21749.6 Da
IEP (calculated)
4.112
GRAVY (calculated)
-0.935
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLCLVVNAF FIFPAELVCC KVMGRVQWDE ANIVEIESNK PVRQKITEPK TPYHPMIHDD DDYDDDGSLS PRGGRSFDEC VDDMQRAEEL KNARFTSQGS
101: GSGGGGWSSA EDEEADPLDD EGLEGEKNER FSELRRVHYD EFHKVKELRS LGSFYEEEEE DEDDDASKKA DTTTSPHSEG GVTKEVEAAE KSSS
101: GSGGGGWSSA EDEEADPLDD EGLEGEKNER FSELRRVHYD EFHKVKELRS LGSFYEEEEE DEDDDASKKA DTTTSPHSEG GVTKEVEAAE KSSS
001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
Arabidopsis Description
I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.