Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52200.1 | KRG96778 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | KRH68493 | AT3G05580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35346 | Soybean | nucleus | 85.26 | 85.26 |
| KRH09088 | Soybean | nucleus | 64.74 | 56.42 |
| KRH38536 | Soybean | nucleus | 58.97 | 52.27 |
| Os05t0301600-01 | Rice | nucleus | 46.79 | 44.24 |
| KXG34763 | Sorghum | nucleus | 45.51 | 42.77 |
| TraesCS4D01G067000.1 | Wheat | nucleus | 45.51 | 42.52 |
| TraesCS4B01G068000.1 | Wheat | nucleus | 45.51 | 42.52 |
| TraesCS4A01G246900.1 | Wheat | nucleus | 45.51 | 42.26 |
| Solyc03g025980.2.1 | Tomato | nucleus | 44.87 | 41.42 |
| PGSC0003DMT400037153 | Potato | nucleus | 45.51 | 41.04 |
| VIT_16s0100g01230.t01 | Wine grape | nucleus | 47.44 | 40.88 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 43.59 | 40.48 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 47.44 | 40.44 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 42.31 | 39.52 |
| CDY00518 | Canola | nucleus | 43.59 | 37.99 |
| CDY31914 | Canola | nucleus | 42.31 | 37.71 |
| PGSC0003DMT400028137 | Potato | nucleus | 38.46 | 37.27 |
| CDY38907 | Canola | nucleus | 43.59 | 37.16 |
| Bra029133.1-P | Field mustard | nucleus | 41.67 | 35.52 |
| AT5G52200.1 | Thale cress | nucleus | 42.95 | 35.08 |
| Solyc05g005520.1.1 | Tomato | cytosol | 33.33 | 34.21 |
| CDY32592 | Canola | extracellular | 42.31 | 34.02 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 32.05 | 34.01 |
| CDX92715 | Canola | extracellular | 42.31 | 32.04 |
| PGSC0003DMT400079604 | Potato | cytosol | 32.69 | 31.88 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 48.72 | 31.15 |
| Bra028297.1-P | Field mustard | nucleus | 42.95 | 25.38 |
| Zm00001d037594_P001 | Maize | extracellular | 3.85 | 25.0 |
| Zm00001d046694_P001 | Maize | extracellular | 3.85 | 25.0 |
| Zm00001d010993_P001 | Maize | extracellular | 3.85 | 25.0 |
| Bra019158.1-P | Field mustard | nucleus | 40.38 | 8.07 |
| CDY50200 | Canola | nucleus | 41.03 | 7.91 |
Protein Annotations
| EntrezGene:100788300 | MapMan:35.2 | EMBL:ACUP02012689 | EnsemblPlantsGene:GLYMA_20G157200 | GO:GO:0000164 | GO:GO:0003674 |
| GO:GO:0004864 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0032515 | GO:GO:0043086 | GO:GO:0043666 | UniProt:K7N3N8 |
| EnsemblPlants:KRG91469 | ProteinID:KRG91469 | ProteinID:KRG91469.1 | ProteinID:KRG91470.1 | ProteinID:KRG91471.1 | ProteinID:KRG91472.1 |
| PFAM:PF04979 | InterPro:PPI-2 | PANTHER:PTHR12398 | PANTHER:PTHR12398:SF24 | UniParc:UPI000233DE6C | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:-:39612442..39616196
Molecular Weight (calculated)
17671.6 Da
IEP (calculated)
4.242
GRAVY (calculated)
-1.478
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGRVRWNED NIGEIEANKP VRQKITEPKT PYHPMIDDDS SPSPVQGDFD EYNGDKDHSA NAEQTGFKNG ACCNRKGTRQ SDGWTSSEDE AEETEEDEED
101: RSLSFKEHRK AHYDEFLKVK ELQQKASLED GSDEDDNAEL TIEEKKNDSS SPISAT
101: RSLSFKEHRK AHYDEFLKVK ELQQKASLED GSDEDDNAEL TIEEKKNDSS SPISAT
001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
Arabidopsis Description
I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.