CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019158.1-P	Field mustard	nucleus	87.64	90.78
CDX92715	Canola	extracellular	20.64	81.07
CDY00518	Canola	nucleus	14.22	64.25
CDY31914	Canola	nucleus	13.84	64.0
CDY38907	Canola	nucleus	12.48	55.19
CDY32592	Canola	extracellular	11.99	50.0
KRH38536	Soybean	nucleus	10.26	47.16
KRH09088	Soybean	nucleus	10.38	46.93
Os05t0301600-01	Rice	nucleus	9.39	46.06
PGSC0003DMT400037153	Potato	nucleus	9.77	45.66
KXG34763	Sorghum	nucleus	9.27	45.18
Solyc03g025980.2.1	Tomato	nucleus	9.27	44.38
TraesCS4D01G067000.1	Wheat	nucleus	9.15	44.31
TraesCS4B01G068000.1	Wheat	nucleus	9.15	44.31
HORVU4Hr1G011360.1	Barley	nucleus	9.15	44.05
TraesCS4A01G246900.1	Wheat	nucleus	9.15	44.05
GSMUA_Achr6P26070_001	Banana	extracellular	9.64	42.62
TraesCS1B01G066300.1	Wheat	nucleus	8.78	42.52
KRG91469	Soybean	nucleus	7.91	41.03
KRH35346	Soybean	nucleus	7.54	39.1
VIT_02s0025g04180.t01	Wine grape	nucleus	6.92	38.1
PGSC0003DMT400028137	Potato	nucleus	7.54	37.89
Solyc05g005520.1.1	Tomato	cytosol	6.55	34.87
PGSC0003DMT400079604	Potato	cytosol	6.8	34.38
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	9.52	31.56
Zm00001d010993_P001	Maize	extracellular	0.37	12.5
Zm00001d037594_P001	Maize	extracellular	0.37	12.5
Zm00001d046694_P001	Maize	extracellular	0.37	12.5

Protein Annotations

MapMan:35.1	GO:A0A078IH05	UniProt:A0A078IH05	EnsemblPlants:CDY50200	ProteinID:CDY50200	ProteinID:CDY50200.1
ncoils:Coil	GO:GO:0003674	GO:GO:0004864	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0032515	GO:GO:0043086	GO:GO:0043666	EnsemblPlantsGene:GSBRNA2T00096133001	InterPro:LIM-bd/SEUSS	PFAM:PF01803
PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	UniParc:UPI0004EE25E6	SEG:seg

Description

BnaA03g47480DBnaA03g47480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH05]

Coordinates

chrLK032888:+:86340..92294

Molecular Weight (calculated)

92639.6 Da

IEP (calculated)

7.713

GRAVY (calculated)

-0.670

Length

809 amino acids

Sequence
(BLAST)

001: MFPIYGSGAV HIVPFSLAIS KTSLGVASSS MLILNGRGRV QWDEANIVEI ESNKPVRQKI TEPKTPYHPP YPMIDDDGGS LSSRVRSFDN FVEMHRAEEL
101: KNDLNDLASS SKIISHISDS GHWTPSEDEA EPIDQNEEDP EGEKNTSFNE HRRVHYDEFR MVKEMRSSGG SFYGEDAEGD DSAKTGKPEA TISQNTPGFI
201: DQDIPLALTL LLLSKSNIVF WFTGNQTEVA ALNTIPVRTW SFLVLGTGIG ASASPSRSRS RSLRDRKFVG FDYSSILKVC SFSSVPMGEN NYYHVDKKKK
301: PKLEEVEQDD MLQHYNQYQD PPTGGQDVQL QAWRRQQNQF LQSQRPRHLP QQQYIQHQAP TVRNPQLQAL LHRYRLRQHQ QTLQLQLQQL RRLLLQQQIP
401: PNVCPFGGGM CAHRKFMMFL HHIKQRPEDN CITFWRAFVA EYFLPRAKQR LCFSQYKGAD HMLGTLPQGM WQCNHCGTKS GKGVEATFDV LPRLFEIKFA
501: SGFVNELLSL EDPRECRVSS GLIVLKYRKL VQTIEYEQCR VVHEGPFLII FSQDLKILRW EFCVQRHEEF LPRRRIAPKV NQLLQVVAQQ DSQTNSNMVL
601: AARRQLANSM ELQPLNDLGY PKKYFRALQT YEVVKSMKAL MDFTENHKIG PIEGWKRLSE QTERMRLQRQ KMQEMEHLWN SGAMNRSAQA QLDGLTGYNN
701: HHHSSAQAAA ALTNNQSMLM RLNAVNNQYS DTSIQEGFSS SQHPTPNSNQ GHQRQNLATG GFLSSPQMQQ QQQRTLNTFQ QTHFPEDATE IPVEFSDDNF
801: NDSDKQGSL

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.