Factsheet for PGSC0003DMT400037153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063710

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	PGSC0003DMT400063710	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025980.2.1	Tomato	nucleus	93.64	95.86
PGSC0003DMT400028137	Potato	nucleus	56.65	60.87
VIT_16s0100g01230.t01	Wine grape	nucleus	54.91	52.49
KRH38536	Soybean	nucleus	52.6	51.7
KRH09088	Soybean	nucleus	52.6	50.84
Os05t0301600-01	Rice	nucleus	45.09	47.27
TraesCS4A01G246900.1	Wheat	nucleus	45.09	46.43
KXG34763	Sorghum	nucleus	44.51	46.39
TraesCS4D01G067000.1	Wheat	nucleus	44.51	46.11
TraesCS4B01G068000.1	Wheat	nucleus	44.51	46.11
CDY31914	Canola	nucleus	46.24	45.71
KRG91469	Soybean	nucleus	41.04	45.51
CDY38907	Canola	nucleus	47.98	45.36
CDY00518	Canola	nucleus	46.82	45.25
HORVU4Hr1G011360.1	Barley	nucleus	43.93	45.24
Bra029133.1-P	Field mustard	nucleus	46.82	44.26
KRH35346	Soybean	nucleus	38.73	42.95
AT5G52200.1	Thale cress	nucleus	46.82	42.41
TraesCS1B01G066300.1	Wheat	nucleus	40.46	41.92
GSMUA_Achr6P26070_001	Banana	extracellular	43.93	41.53
PGSC0003DMT400079604	Potato	cytosol	38.15	41.25
CDY32592	Canola	extracellular	45.66	40.72
CDX92715	Canola	extracellular	46.24	38.84
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	46.24	32.79
Bra028297.1-P	Field mustard	nucleus	47.4	31.06
Zm00001d046694_P001	Maize	extracellular	2.31	16.67
Zm00001d037594_P001	Maize	extracellular	2.31	16.67
Zm00001d010993_P001	Maize	extracellular	2.31	16.67
Bra019158.1-P	Field mustard	nucleus	45.09	9.99
CDY50200	Canola	nucleus	45.66	9.77

Protein Annotations

EntrezGene:102605772	MapMan:35.1	GO:GO:0003674	GO:GO:0004864	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0032515	GO:GO:0043086	GO:GO:0043666	UniProt:M1B4W9	PFAM:PF04979
EnsemblPlantsGene:PGSC0003DMG400014326	PGSC:PGSC0003DMG400014326	EnsemblPlants:PGSC0003DMT400037153	InterPro:PPI-2	PANTHER:PTHR12398	PANTHER:PTHR12398:SF24
UniParc:UPI0002954619	RefSeq:XP_006353334.1	RefSeq:XP_006353335.1	RefSeq:XP_006353336.1	SEG:seg	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014326]

Coordinates

chr3:-:42562560..42567476

Molecular Weight (calculated)

19376.9 Da

IEP (calculated)

4.942

GRAVY (calculated)

-1.361

Length

173 amino acids

Sequence
(BLAST)

001: MKRGHVKWDE ANLGEIEANK PVRQKITEPK TPYHRMIDDD GSLSPLRGSF EEGNGDAVHA EAIRSALNEM ASSSKNKSRR SGWTSSEDEA DVMDQDDADS
101: GSRKGKNFKD HRRAHYDEYR RVKELRKKGE QASDDEDEDE DLVGKDGRSD SSSSLSTAVK DIEIKEGSMD TSK

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.