Factsheet for PGSC0003DMT400063710

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028137
PGSC0003DMT400037153
PGSC0003DMT400079604

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05580.1	PGSC0003DMT400028137	AT5G52200.1	21798944
AT3G05580.1	PGSC0003DMT400037153	AT5G52200.1	21798944
AT3G05580.1	PGSC0003DMT400079604	AT5G52200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099860.2.1	Tomato	cytosol, unclear	100.0	100.0
AT3G05580.1	Thale cress	cytosol	85.71	84.91
CDX80617	Canola	cytosol	85.08	84.01
Bra001155.1-P	Field mustard	cytosol	84.44	83.65
Bra009941.1-P	Field mustard	cytosol	84.44	83.39
CDY25019	Canola	cytosol	84.13	83.33
KRH68493	Soybean	cytosol	85.4	83.02
CDY18815	Canola	cytosol	83.81	83.02
CDY05560	Canola	cytosol	83.81	83.02
Bra039424.1-P	Field mustard	cytosol	84.44	82.87
CDX86135	Canola	cytosol	66.67	82.68
CDY05182	Canola	cytosol	84.13	82.55
CDY27754	Canola	cytosol	84.13	82.55
Bra040535.1-P	Field mustard	cytosol	83.17	82.39
VIT_14s0060g01750.t01	Wine grape	cytosol	82.86	80.31
AT5G27840.4	Thale cress	cytosol	84.13	80.3
Bra020573.1-P	Field mustard	cytosol	82.86	75.87
CDY40717	Canola	cytosol	85.08	73.63
PGSC0003DMT400017290	Potato	cytosol	70.48	73.03
TraesCS1D01G104400.1	Wheat	cytosol	75.24	72.92
TraesCS1B01G128100.1	Wheat	cytosol	75.24	72.92
TraesCS1A01G095500.1	Wheat	cytosol	75.24	72.92
GSMUA_Achr11P...	Banana	cytosol	73.02	72.78
Zm00001d037601_P001	Maize	cytosol	68.57	72.0
Os01t0349400-01	Rice	cytosol	74.29	72.0
HORVU1Hr1G022370.5	Barley	cytosol	74.29	71.78
KRG96778	Soybean	nucleus	85.4	71.73
PGSC0003DMT400078199	Potato	cytosol	70.48	71.61
TraesCS3D01G199300.1	Wheat	cytosol	73.65	71.38
EES02921	Sorghum	cytosol	73.02	70.77
CDX74139	Canola	cytosol	84.44	70.74
GSMUA_Achr2P02240_001	Banana	cytosol	71.11	69.78
Zm00001d009844_P001	Maize	cytosol	74.6	69.53
GSMUA_Achr8P06590_001	Banana	cytosol	60.32	67.86
PGSC0003DMT400044371	Potato	cytosol	70.16	66.97
PGSC0003DMT400053683	Potato	cytosol	55.24	66.67
TraesCS3A01G195500.1	Wheat	cytosol	73.02	66.47
GSMUA_Achr11P...	Banana	cytosol	74.29	66.29
TraesCS3B01G226800.1	Wheat	cytosol	73.33	66.0
PGSC0003DMT400041996	Potato	cytosol	71.75	65.7
HORVU3Hr1G044550.3	Barley	cytosol	57.78	60.87
PGSC0003DMT400060162	Potato	cytosol	72.06	54.96
Zm00001d009181_P005	Maize	cytosol	61.27	52.45
OQU77459	Sorghum	cytosol	74.92	49.68
PGSC0003DMT400057148	Potato	cytosol	44.76	46.23
PGSC0003DMT400058216	Potato	cytosol	44.44	45.75
PGSC0003DMT400013570	Potato	cytosol	44.44	45.75
PGSC0003DMT400004853	Potato	cytosol	43.81	45.1
PGSC0003DMT400079934	Potato	cytosol	43.17	43.59
PGSC0003DMT400081973	Potato	cytosol	43.17	43.45
PGSC0003DMT400039336	Potato	cytosol	40.0	41.58
PGSC0003DMT400069607	Potato	cytosol	40.32	37.91

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102583934	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872
InterPro:IPR029052	UniProt:M1CB27	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	EnsemblPlantsGene:PGSC0003DMG402024761
PGSC:PGSC0003DMG402024761	EnsemblPlants:PGSC0003DMT400063710	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF262
SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0002768F74	RefSeq:XP_006344689.1
SEG:seg	:	:	:	:	:

Description

Serine/threonine-protein phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG402024761]

Coordinates

chr1:-:77594305..77597543

Molecular Weight (calculated)

35481.0 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.119

Length

315 amino acids

Sequence
(BLAST)

001: MEGLMEKGVL DDIIGRLLEE KGGKQVQLSE AEIRQLCVNA RQIFLSQPNL LRIRAPVRIC GDIHGQFQDL LRLFEYGGYP PSANYLFLGD YVDRGKQSLE
101: TICLLLAYKI RYPDKIFLLR GNHEDAKINR VYGFYDECKR RFNVRLWKIF TDCFNCLPVA ALIDEKILCM HGGISPELKS LDLINEIERP AEIPDGGLLC
201: DLLWADPDPR IKGWSDSDRG VSCTFGPDVV AEFLAKNELD LICRGHQVVE DGYEFFAKRR LVTLFSAPNY GGEFDNAGAL LSVDEQLVCS FEILKPVLSS
301: SSKLPLKKPP KAGGM

Best Arabidopsis Sequence Match ( AT3G05580.1 )
(BLAST)

001: MMTSMEGMME MGVLDDIIRR LLEGKGGKQV QLSEVEIRQL CVNARQIFLS QPNLLELHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI FLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKIFTDCFNC LPVAALIDEK ILCMHGGLSP ELENLGQIRE IQRPTEIPDN
201: GLLCDLLWSD PDQKNEGWTD SDRGISCTFG ADVVADFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDQS LVCSFEILKP
301: APASSTNPLK KVPKMGKS

Arabidopsis Description

TOPP9Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VKY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.