Factsheet for PGSC0003DMT400028137

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063710

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	PGSC0003DMT400063710	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037153	Potato	nucleus	60.87	56.65
VIT_16s0100g01230.t01	Wine grape	nucleus	51.55	45.86
KXG34763	Sorghum	nucleus	44.1	42.77
KRH38536	Soybean	nucleus	46.58	42.61
Os05t0301600-01	Rice	nucleus	43.48	42.42
TraesCS4D01G067000.1	Wheat	nucleus	43.48	41.92
TraesCS4B01G068000.1	Wheat	nucleus	43.48	41.92
PGSC0003DMT400079604	Potato	cytosol	41.61	41.88
TraesCS4A01G246900.1	Wheat	nucleus	43.48	41.67
HORVU4Hr1G011360.1	Barley	nucleus	43.48	41.67
KRH09088	Soybean	nucleus	44.72	40.22
CDY31914	Canola	nucleus	43.48	40.0
CDY00518	Canola	nucleus	43.48	39.11
KRG91469	Soybean	nucleus	37.27	38.46
CDY38907	Canola	nucleus	43.48	38.25
TraesCS1B01G066300.1	Wheat	nucleus	39.13	37.72
Bra029133.1-P	Field mustard	nucleus	42.86	37.7
KRH35346	Soybean	nucleus	36.02	37.18
AT5G52200.1	Thale cress	nucleus	43.48	36.65
CDY32592	Canola	extracellular	44.1	36.6
GSMUA_Achr6P26070_001	Banana	extracellular	40.37	35.52
CDX92715	Canola	extracellular	39.75	31.07
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	42.24	27.87
Bra028297.1-P	Field mustard	nucleus	44.72	27.27
Zm00001d046694_P001	Maize	extracellular	2.48	16.67
Zm00001d037594_P001	Maize	extracellular	2.48	16.67
Zm00001d010993_P001	Maize	extracellular	2.48	16.67
Bra019158.1-P	Field mustard	nucleus	37.27	7.68
CDY50200	Canola	nucleus	37.89	7.54

Protein Annotations

MapMan:35.2	GO:GO:0003674	GO:GO:0004864	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234
GO:GO:0032515	GO:GO:0043086	GO:GO:0043666	UniProt:M1AQR7	PFAM:PF04979	EnsemblPlantsGene:PGSC0003DMG400010855
PGSC:PGSC0003DMG400010855	EnsemblPlants:PGSC0003DMT400028137	InterPro:PPI-2	PANTHER:PTHR12398	PANTHER:PTHR12398:SF24	UniParc:UPI000294A7FA
SEG:seg	:	:	:	:	:

Description

Protein phosphatase inhibitor 2 containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010855]

Coordinates

chr1:-:7602323..7606809

Molecular Weight (calculated)

18135.9 Da

IEP (calculated)

4.188

GRAVY (calculated)

-1.405

Length

161 amino acids

Sequence
(BLAST)

001: MGAHVKWDEA NLEEIEANKP ERQKITEPKT PFHRSIDDDD GSPSPWDTIE EASALDEASS SENKSRHSGW PSSDDEADIM DQDDEDSGSE RSRCFREHRR
101: AHYDEYRKIK ELRREGSSLE GASDDEIEDL EKRDGRCNTS SSLTSAVEGV DISEGSTDDS K

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.