Factsheet for VIT_16s0100g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38536	Soybean	nucleus	61.33	63.07
KRH09088	Soybean	nucleus	58.56	59.22
PGSC0003DMT400037153	Potato	nucleus	52.49	54.91
Solyc03g025980.2.1	Tomato	nucleus	50.28	53.85
KXG34763	Sorghum	nucleus	49.17	53.61
Os05t0301600-01	Rice	nucleus	48.62	53.33
TraesCS4D01G067000.1	Wheat	nucleus	48.62	52.69
TraesCS4B01G068000.1	Wheat	nucleus	48.62	52.69
TraesCS4A01G246900.1	Wheat	nucleus	48.62	52.38
PGSC0003DMT400028137	Potato	nucleus	45.86	51.55
HORVU4Hr1G011360.1	Barley	nucleus	47.51	51.19
GSMUA_Achr6P26070_001	Banana	extracellular	49.72	49.18
KRH35346	Soybean	nucleus	41.44	48.08
TraesCS1B01G066300.1	Wheat	nucleus	44.2	47.9
KRG91469	Soybean	nucleus	40.88	47.44
VIT_02s0025g04180.t01	Wine grape	nucleus	36.46	44.9
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	50.83	37.7
Solyc05g005520.1.1	Tomato	cytosol	29.83	35.53
PGSC0003DMT400079604	Potato	cytosol	30.39	34.38
Zm00001d010993_P001	Maize	extracellular	1.66	12.5
Zm00001d037594_P001	Maize	extracellular	1.66	12.5
Zm00001d046694_P001	Maize	extracellular	1.66	12.5

Protein Annotations

EntrezGene:100254986	wikigene:100254986	MapMan:35.1	EMBL:AM442883	ProteinID:CAN74035	ProteinID:CAN74035.1
ProteinID:CCB56419	ProteinID:CCB56419.1	UniProt:F6HP13	EMBL:FN596000	GO:GO:0000164	GO:GO:0003674
GO:GO:0004864	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0007049	GO:GO:0007064	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0031390
GO:GO:0032515	GO:GO:0043086	GO:GO:0043666	EntrezGene:LOC100254986	wikigene:LOC100254986	PFAM:PF04979
InterPro:PPI-2	PANTHER:PTHR12398	PANTHER:PTHR12398:SF24	UniParc:UPI00019862F9	ArrayExpress:VIT_16s0100g01230	EnsemblPlantsGene:VIT_16s0100g01230
EnsemblPlants:VIT_16s0100g01230.t01	RefSeq:XP_002263168	RefSeq:XP_002263168.2	RefSeq:XP_003634061	RefSeq:XP_003634061.1	RefSeq:XP_010662496.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:16728009..16729294

Molecular Weight (calculated)

20201.7 Da

IEP (calculated)

4.443

GRAVY (calculated)

-1.273

Length

181 amino acids

Sequence
(BLAST)

001: MFNRGRVRWD EANLGEIEAN KPVRQKITEP KTPYHPMIDE DDEHGSVSPI RGDLDDGCDN VIHAEAIRNA LNDVASSSRN TSLSGGWTSS DDEADAMEQD
101: DEDFETDRNG MSFNEHRRAH YDEFRKVKEL RKQGSFMEDE ADEDNEGKEN GGRCDSSSAR ARSKEGSSTL PKKPSAPPNG V

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.