Factsheet for Solyc05g005520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099860.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	Solyc01g099860.2.1	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079604	Potato	cytosol	73.03	69.38
Solyc03g025980.2.1	Tomato	nucleus	40.79	36.69
KRH38536	Soybean	nucleus	41.45	35.8
KRH09088	Soybean	nucleus	40.79	34.64
KXG34763	Sorghum	nucleus	36.84	33.73
KRG91469	Soybean	nucleus	34.21	33.33
KRH35346	Soybean	nucleus	33.55	32.69
Os05t0301600-01	Rice	nucleus	34.87	32.12
TraesCS4D01G067000.1	Wheat	nucleus	33.55	30.54
TraesCS4A01G246900.1	Wheat	nucleus	33.55	30.36
GSMUA_Achr6P26070_001	Banana	extracellular	36.18	30.05
TraesCS4B01G068000.1	Wheat	nucleus	32.89	29.94
VIT_16s0100g01230.t01	Wine grape	nucleus	35.53	29.83
HORVU4Hr1G011360.1	Barley	nucleus	32.89	29.76
CDY31914	Canola	nucleus	33.55	29.14
CDY00518	Canola	nucleus	34.21	29.05
AT5G52200.1	Thale cress	nucleus	35.53	28.27
TraesCS1B01G066300.1	Wheat	nucleus	30.92	28.14
CDY38907	Canola	nucleus	33.55	27.87
Bra029133.1-P	Field mustard	nucleus	33.55	27.87
CDX92715	Canola	extracellular	36.84	27.18
CDY32592	Canola	extracellular	34.21	26.8
Zm00001d046694_P001	Maize	extracellular	3.95	25.0
Zm00001d010993_P001	Maize	extracellular	3.95	25.0
Zm00001d037594_P001	Maize	extracellular	3.95	25.0
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	36.18	22.54
Bra028297.1-P	Field mustard	nucleus	33.55	19.32
Bra019158.1-P	Field mustard	nucleus	34.87	6.79
CDY50200	Canola	nucleus	34.87	6.55

Protein Annotations

MapMan:35.2	GO:GO:0000164	GO:GO:0003674	GO:GO:0004864	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0032515
GO:GO:0043086	GO:GO:0043666	UniProt:K4BW83	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398
EnsemblPlantsGene:Solyc05g005520.1	EnsemblPlants:Solyc05g005520.1.1	UniParc:UPI0002766E13	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:371721..372179

Molecular Weight (calculated)

17927.0 Da

IEP (calculated)

4.167

GRAVY (calculated)

-1.626

Length

152 amino acids

Sequence
(BLAST)

001: MGVIWDEEKL EEIEANKPVR MKITEPKTPY HRPKIDDNDN FEEYNNRSDE VDDDMASCSS KSRSDDPRKN NDNDVVVMDH ADEDSDESER KRNFIEHRRG
101: HYDEYKRIKE LQRNGSLLEE FDDDDNDDDN NNVIDDGVKG IKIEEEKENT ST

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.