Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50200 | Canola | nucleus | 90.78 | 87.64 |
| Bra029133.1-P | Field mustard | nucleus | 12.8 | 54.64 |
| KRH38536 | Soybean | nucleus | 10.5 | 46.59 |
| KRH09088 | Soybean | nucleus | 10.63 | 46.37 |
| Os05t0301600-01 | Rice | nucleus | 9.6 | 45.45 |
| PGSC0003DMT400037153 | Potato | nucleus | 9.99 | 45.09 |
| KXG34763 | Sorghum | nucleus | 9.48 | 44.58 |
| Solyc03g025980.2.1 | Tomato | nucleus | 9.48 | 43.79 |
| TraesCS4D01G067000.1 | Wheat | nucleus | 9.35 | 43.71 |
| TraesCS4B01G068000.1 | Wheat | nucleus | 9.35 | 43.71 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 9.35 | 43.45 |
| TraesCS4A01G246900.1 | Wheat | nucleus | 9.35 | 43.45 |
| Bra028297.1-P | Field mustard | nucleus | 14.47 | 42.8 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 9.86 | 42.08 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 8.96 | 41.92 |
| KRG91469 | Soybean | nucleus | 8.07 | 40.38 |
| KRH35346 | Soybean | nucleus | 7.68 | 38.46 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 7.04 | 37.41 |
| PGSC0003DMT400028137 | Potato | nucleus | 7.68 | 37.27 |
| PGSC0003DMT400079604 | Potato | cytosol | 7.17 | 35.0 |
| Solyc05g005520.1.1 | Tomato | cytosol | 6.79 | 34.87 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 9.6 | 30.74 |
| Zm00001d010993_P001 | Maize | extracellular | 0.38 | 12.5 |
| Zm00001d037594_P001 | Maize | extracellular | 0.38 | 12.5 |
| Zm00001d046694_P001 | Maize | extracellular | 0.38 | 12.5 |
Protein Annotations
| MapMan:35.1 | EnsemblPlantsGene:Bra019158 | EnsemblPlants:Bra019158.1 | EnsemblPlants:Bra019158.1-P | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0004864 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009966 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0032515 | GO:GO:0043086 |
| GO:GO:0043666 | InterPro:LIM-bd/SEUSS | UniProt:M4DRL5 | PFAM:PF01803 | PFAM:PF04979 | InterPro:PPI-2 |
| PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 | UniParc:UPI00025410DA | SEG:seg | : | : |
Description
AT4G25520 (E=3e-064) SLK1 | SLK1 (SEUSS-LIKE 1); transcription regulator
Coordinates
chrA03:-:25997901..26002515
Molecular Weight (calculated)
89909.3 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.743
Length
781 amino acids
Sequence
(BLAST)
(BLAST)
001: MLILNGRGRV QWDEANIVEI ESNKPVRQKI TEPKTPYHPP YPMIDDDGGS LCSRVRSFDN FVEMHRAEEL KNDLNDLASS SKIISHISDS GDWTPSEDEA
101: EPIDQNEEDP EGEKNTSFNE HRRVHYDEFR MVKEMRSSGG SFYGEDAEGD DSAKTGKPEA TISQNTPGFI DQDIPLALTL LLLSKSNIVF WFTGNQTEVA
201: ALNTIPVRTW SFLVLGTGIG ASASPSRSRS RSLRDRKFVG FDYSSILKVC SFSSVPMGEN NYYHVDKKKK PKLEEVEQDD MLHYNQYQDP PTGGQDLQLQ
301: AWRRQQNQFL QSQRPHHLPQ QQYIQHQGPT VRNPQLQALL HRYRLRQHQQ TLQLQLQQQQ QLRRLLLQQQ IPPNVCPFGG GMCAHRKFMM FLHHIKQRPE
401: DNCITFWRAF VAEYFSPRAK QRLCFSQYKG ADHMLGTLPQ GMWQCNHCGT KSGKGVEATF DVLPRLFEIK FASGFVNELL SLEDPRECRV SSGLIVLKYR
501: KLVQTIEYEQ CRVVHEGPFL IIFSQDLKIL RWEFCVQRHE EFLPRRRIAP KVNQLLQVVA QQDLQTNSNM VLAARRQLAN SMELQPLNDL GYPKKYFRAL
601: QTYEVVKSMK ALMDFTENHK IGPIEGWKRL SEQKERMRLQ RQKMQEMEHL WNSGAMNRSA QAQMDGLTGY NNHHHSSAQA AAALTNNQSM LMRLNAVNNQ
701: YSDTSIQEGF SSSQHPTPNS NQGHQRQNLA TGGFLSSPQM QQQQQRTLNT FQQTHFPEDA TEIPVEFSDD NFNDSDKQGS L
101: EPIDQNEEDP EGEKNTSFNE HRRVHYDEFR MVKEMRSSGG SFYGEDAEGD DSAKTGKPEA TISQNTPGFI DQDIPLALTL LLLSKSNIVF WFTGNQTEVA
201: ALNTIPVRTW SFLVLGTGIG ASASPSRSRS RSLRDRKFVG FDYSSILKVC SFSSVPMGEN NYYHVDKKKK PKLEEVEQDD MLHYNQYQDP PTGGQDLQLQ
301: AWRRQQNQFL QSQRPHHLPQ QQYIQHQGPT VRNPQLQALL HRYRLRQHQQ TLQLQLQQQQ QLRRLLLQQQ IPPNVCPFGG GMCAHRKFMM FLHHIKQRPE
401: DNCITFWRAF VAEYFSPRAK QRLCFSQYKG ADHMLGTLPQ GMWQCNHCGT KSGKGVEATF DVLPRLFEIK FASGFVNELL SLEDPRECRV SSGLIVLKYR
501: KLVQTIEYEQ CRVVHEGPFL IIFSQDLKIL RWEFCVQRHE EFLPRRRIAP KVNQLLQVVA QQDLQTNSNM VLAARRQLAN SMELQPLNDL GYPKKYFRAL
601: QTYEVVKSMK ALMDFTENHK IGPIEGWKRL SEQKERMRLQ RQKMQEMEHL WNSGAMNRSA QAQMDGLTGY NNHHHSSAQA AAALTNNQSM LMRLNAVNNQ
701: YSDTSIQEGF SSSQHPTPNS NQGHQRQNLA TGGFLSSPQM QQQQQRTLNT FQQTHFPEDA TEIPVEFSDD NFNDSDKQGS L
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.