Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G068000.1 | Wheat | nucleus | 97.02 | 97.6 |
| TraesCS4D01G067000.1 | Wheat | nucleus | 96.43 | 97.01 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 93.45 | 93.45 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 88.69 | 89.22 |
| Os05t0301600-01 | Rice | nucleus | 75.0 | 76.36 |
| Zm00001d019263_P001 | Maize | nucleus | 73.21 | 74.55 |
| KXG34763 | Sorghum | nucleus | 73.21 | 74.1 |
| KRH38536 | Soybean | nucleus | 51.19 | 48.86 |
| VIT_16s0100g01230.t01 | Wine grape | nucleus | 52.38 | 48.62 |
| KRH09088 | Soybean | nucleus | 50.0 | 46.93 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 50.6 | 46.45 |
| Solyc03g025980.2.1 | Tomato | nucleus | 45.83 | 45.56 |
| KRG91469 | Soybean | nucleus | 42.26 | 45.51 |
| PGSC0003DMT400037153 | Potato | nucleus | 46.43 | 45.09 |
| KRH35346 | Soybean | nucleus | 41.07 | 44.23 |
| PGSC0003DMT400028137 | Potato | nucleus | 41.67 | 43.48 |
| CDY31914 | Canola | nucleus | 44.64 | 42.86 |
| CDY00518 | Canola | nucleus | 45.24 | 42.46 |
| AT5G52200.1 | Thale cress | nucleus | 46.43 | 40.84 |
| CDY38907 | Canola | nucleus | 44.05 | 40.44 |
| Bra029133.1-P | Field mustard | nucleus | 43.45 | 39.89 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 54.76 | 37.7 |
| CDX92715 | Canola | extracellular | 44.64 | 36.41 |
| CDY32592 | Canola | extracellular | 41.67 | 36.08 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 30.95 | 35.37 |
| PGSC0003DMT400079604 | Potato | cytosol | 32.14 | 33.75 |
| Solyc05g005520.1.1 | Tomato | cytosol | 30.36 | 33.55 |
| Bra028297.1-P | Field mustard | nucleus | 45.83 | 29.17 |
| Bra019158.1-P | Field mustard | nucleus | 43.45 | 9.35 |
| CDY50200 | Canola | nucleus | 44.05 | 9.15 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0004864 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0043666 | PFAM:PF04979 | InterPro:PPI-2 | PANTHER:PTHR12398 | PANTHER:PTHR12398:SF24 | EnsemblPlantsGene:TraesCS4A01G246900 |
| EnsemblPlants:TraesCS4A01G246900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:557868542..557870242
Molecular Weight (calculated)
18846.1 Da
IEP (calculated)
4.328
GRAVY (calculated)
-1.229
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSHRVKWNE DNLYEIESNK PVRQKITEPK TPYHPMMDEE DGSLSPTRPF DKCLDETVSA EAILTALNGV ASSSKNDSKD DEWASSDDDA DAMEQDDDSE
101: ADRSSVSFKE HRRNHYDEFR KVKELMRTGS LVEDEARVNE RAANNAEDKT AGEKATGDKS ESSASPQV
101: ADRSSVSFKE HRRNHYDEFR KVKELMRTGS LVEDEARVNE RAANNAEDKT AGEKATGDKS ESSASPQV
001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
Arabidopsis Description
I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.