Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52200.1 | CDX74139 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY05182 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY18815 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY27754 | AT3G05580.1 | 21798944 |
| AT5G52200.1 | CDY40717 | AT3G05580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31914 | Canola | nucleus | 96.65 | 98.86 |
| AT5G52200.1 | Thale cress | nucleus | 81.01 | 75.92 |
| CDY38907 | Canola | nucleus | 74.3 | 72.68 |
| Bra028297.1-P | Field mustard | nucleus | 94.97 | 64.39 |
| CDY32592 | Canola | extracellular | 67.04 | 61.86 |
| CDX92715 | Canola | extracellular | 64.8 | 56.31 |
| KRH38536 | Soybean | nucleus | 50.28 | 51.14 |
| KRH09088 | Soybean | nucleus | 50.84 | 50.84 |
| Os05t0301600-01 | Rice | nucleus | 44.69 | 48.48 |
| KXG34763 | Sorghum | nucleus | 43.58 | 46.99 |
| PGSC0003DMT400037153 | Potato | nucleus | 45.25 | 46.82 |
| Solyc03g025980.2.1 | Tomato | nucleus | 43.58 | 46.15 |
| TraesCS4D01G067000.1 | Wheat | nucleus | 42.46 | 45.51 |
| TraesCS4B01G068000.1 | Wheat | nucleus | 42.46 | 45.51 |
| HORVU4Hr1G011360.1 | Barley | nucleus | 42.46 | 45.24 |
| TraesCS4A01G246900.1 | Wheat | nucleus | 42.46 | 45.24 |
| KRG91469 | Soybean | nucleus | 37.99 | 43.59 |
| PGSC0003DMT400028137 | Potato | nucleus | 39.11 | 43.48 |
| TraesCS1B01G066300.1 | Wheat | nucleus | 40.22 | 43.11 |
| KRH35346 | Soybean | nucleus | 36.31 | 41.67 |
| GSMUA_Achr6P26070_001 | Banana | extracellular | 42.46 | 41.53 |
| VIT_02s0025g04180.t01 | Wine grape | nucleus | 32.4 | 39.46 |
| Solyc05g005520.1.1 | Tomato | cytosol | 29.05 | 34.21 |
| PGSC0003DMT400079604 | Potato | cytosol | 29.05 | 32.5 |
| GSMUA_Achr9P05730_001 | Banana | golgi, plasma membrane | 44.13 | 32.38 |
| CDY50200 | Canola | nucleus | 64.25 | 14.22 |
| Zm00001d010993_P001 | Maize | extracellular | 1.68 | 12.5 |
| Zm00001d037594_P001 | Maize | extracellular | 1.68 | 12.5 |
| Zm00001d046694_P001 | Maize | extracellular | 1.68 | 12.5 |
Protein Annotations
| MapMan:35.1 | GO:A0A078EMF5 | EnsemblPlants:CDY00518 | ProteinID:CDY00518 | ProteinID:CDY00518.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0004864 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0032515 |
| GO:GO:0043086 | GO:GO:0043666 | EnsemblPlantsGene:GSBRNA2T00110246001 | PFAM:PF04979 | InterPro:PPI-2 | PANTHER:PTHR12398 |
| PANTHER:PTHR12398:SF24 | UniParc:UPI0004EF4C0A | SEG:seg | : | : | : |
Description
BnaA10g07550D
Coordinates
chrLK031919:-:1007210..1008680
Molecular Weight (calculated)
19887.4 Da
IEP (calculated)
4.442
GRAVY (calculated)
-1.203
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSKKGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMI DDDGSLSPRG RSFDECVDDM QRAEELRNVL NEAAASSSRN TSQGSGSGGW SSSEEDEADP
101: MDQDVEDVDG EKNARFNELR RVHYDEFRKV KEMRSSGSFY EEEEEDDGAK GSKTVATTSR HTKGVKKEVD AATTASSSS
101: MDQDVEDVDG EKNARFNELR RVHYDEFRKV KEMRSSGSFY EEEEEDDGAK GSKTVATTSR HTKGVKKEVD AATTASSSS
001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I
Arabidopsis Description
I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.