Factsheet for Bra029133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001155.1-P
Bra039424.1-P
Bra040535.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52200.1	Bra001155.1-P	AT3G05580.1	21798944
AT5G52200.1	Bra039424.1-P	AT3G05580.1	21798944
AT5G52200.1	Bra040535.1-P	AT3G05580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38907	Canola	nucleus	91.26	91.26
AT5G52200.1	Thale cress	nucleus	67.76	64.92
Bra028297.1-P	Field mustard	nucleus	69.95	48.48
KRH38536	Soybean	nucleus	46.45	48.3
KRH09088	Soybean	nucleus	45.9	46.93
PGSC0003DMT400037153	Potato	nucleus	44.26	46.82
Os05t0301600-01	Rice	nucleus	41.53	46.06
Solyc03g025980.2.1	Tomato	nucleus	41.53	44.97
KXG34763	Sorghum	nucleus	40.44	44.58
TraesCS4D01G067000.1	Wheat	nucleus	39.89	43.71
TraesCS4B01G068000.1	Wheat	nucleus	39.89	43.71
HORVU4Hr1G011360.1	Barley	nucleus	39.89	43.45
TraesCS4A01G246900.1	Wheat	nucleus	39.89	43.45
TraesCS1B01G066300.1	Wheat	nucleus	39.34	43.11
PGSC0003DMT400028137	Potato	nucleus	37.7	42.86
KRG91469	Soybean	nucleus	35.52	41.67
GSMUA_Achr6P26070_001	Banana	extracellular	40.44	40.44
KRH35346	Soybean	nucleus	33.33	39.1
VIT_02s0025g04180.t01	Wine grape	nucleus	28.96	36.05
PGSC0003DMT400079604	Potato	cytosol	30.05	34.38
Solyc05g005520.1.1	Tomato	cytosol	27.87	33.55
GSMUA_Achr9P05730_001	Banana	golgi, plasma membrane	41.53	31.15
Zm00001d046694_P001	Maize	extracellular	2.19	16.67
Zm00001d037594_P001	Maize	extracellular	2.19	16.67
Zm00001d010993_P001	Maize	extracellular	2.19	16.67
Bra019158.1-P	Field mustard	nucleus	54.64	12.8

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra029133	EnsemblPlants:Bra029133.1	EnsemblPlants:Bra029133.1-P	GO:GO:0003674	GO:GO:0004864
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966
GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0032515	GO:GO:0043086	GO:GO:0043666
UniProt:M4EK16	PFAM:PF04979	InterPro:PPI-2	PANTHER:PTHR12398	PANTHER:PTHR12398:SF24	UniParc:UPI000254007A
SEG:seg	:	:	:	:	:

Description

AT5G52200 (E=2e-029) | unknown protein

Coordinates

chrA03:+:6502365..6503816

Molecular Weight (calculated)

20164.5 Da

IEP (calculated)

4.227

GRAVY (calculated)

-1.258

Length

183 amino acids

Sequence
(BLAST)

001: MTDPEKKGRV QWDEANIVEI ESNKPVRQKI TEPKTPYHPM IHDDDDDEGS LSPRGGRSFN ECVDDMQRAE DLRNVLNGEA VSSGKGSGSG GGGWSSAEDE
101: EADPLDDEGL EGEKNERFSE LRRVHYDEFH KVKELRSLGS FYEEEEEGED DGASKAETTT SPHSEGGVNK EVEAARKSSS SSS

Best Arabidopsis Sequence Match ( AT5G52200.1 )
(BLAST)

001: MTEPKRGRVQ WDEANIVEIE SNKPVRQKIT EPKTPYHPMM DDDGSLSPRG RAFDECVDDM QRAEELRNVL NDAAASSSRN SSQGSGGGGW SSSDEEEEEA
101: DPMDQDEEGS GSGKNERFNA HRKAHYDEFR KVKELRSSGS FYEEEEEEDD GAKGSKSETT TNSRHTKGGN KELDATKTVS GTSSSSSPEL I

Arabidopsis Description

I-2Protein phosphatase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.