Factsheet for PGSC0003DMT400041996

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053630.2.1	Tomato	cytosol	91.28	97.52
PGSC0003DMT400044371	Potato	cytosol	83.72	87.27
PGSC0003DMT400017290	Potato	cytosol	75.87	85.86
GSMUA_Achr4P29300_001	Banana	cytosol	79.36	85.85
GSMUA_Achr4P25210_001	Banana	cytosol	79.36	85.58
VIT_05s0049g00890.t01	Wine grape	cytosol	80.52	84.97
GSMUA_Achr1P01390_001	Banana	cytosol	81.1	84.8
GSMUA_Achr11P...	Banana	cytosol	79.07	83.44
KRG92313	Soybean	cytosol, nucleus	79.36	82.73
PGSC0003DMT400078199	Potato	cytosol	74.42	82.58
KRH69127	Soybean	cytosol	75.58	81.5
KRH31706	Soybean	cytosol	76.74	78.11
KRH34478	Soybean	cytosol	78.2	77.97
PGSC0003DMT400053683	Potato	cytosol	58.43	77.01
PGSC0003DMT400063710	Potato	cytosol	65.7	71.75
PGSC0003DMT400060162	Potato	cytosol	81.4	67.8
PGSC0003DMT400057148	Potato	cytosol	41.28	46.56
PGSC0003DMT400058216	Potato	cytosol	39.53	44.44
PGSC0003DMT400013570	Potato	cytosol	39.53	44.44
PGSC0003DMT400079934	Potato	cytosol	40.12	44.23
PGSC0003DMT400081973	Potato	cytosol	40.12	44.09
PGSC0003DMT400004853	Potato	cytosol	38.95	43.79
PGSC0003DMT400039336	Potato	cytosol	36.34	41.25
PGSC0003DMT400069607	Potato	cytosol	36.63	37.61

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102594341	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872
InterPro:IPR029052	UniProt:M1BCB8	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	EnsemblPlantsGene:PGSC0003DMG400016290
PGSC:PGSC0003DMG400016290	EnsemblPlants:PGSC0003DMT400041996	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF390
SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0002963105	SEG:seg

Description

Serine/threonine-protein phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400016290]

Coordinates

chr6:-:39629199..39634486

Molecular Weight (calculated)

38883.8 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.246

Length

344 amino acids

Sequence
(BLAST)

001: MDILALDDII HRLLEVRGRP GKQVQLSEAE IRQLCLKSRE IFLRQPNLLE LDAPIKICGD IHGQYSDLLR LFEYGGLPPK SNYLFLGDYV DRGKQSLETI
101: CLLLAYKIKY PENFFLLRGN HECASVNRIY GFYDECKRRF NVRLWKVFTD SFNCLPVAAL IDEKILCMHG GLSPDLQHLD QIRNLQRPTD VPESGLLCDL
201: LWSDPSKDVK GWGMNDRGVS HTFGSDKVTE FLQKQDLDLI CRAHQVVEDG YEFFADRQLV TIFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPAEKKPK
301: FGFGSTTTAK NATPAKTKTC NYVKAGNGLP TLLTGNQLYD VASS

Best Arabidopsis Sequence Match ( AT2G39840.1 )
(BLAST)

001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I

Arabidopsis Description

TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.