CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34478	Soybean	cytosol	93.33	89.28
KRH69127	Soybean	cytosol	82.42	85.27
Solyc06g053630.2.1	Tomato	cytosol	81.82	83.85
GSMUA_Achr4P29300_001	Banana	cytosol	80.3	83.33
KRG97050	Soybean	cytosol	82.12	83.13
KRG92623	Soybean	cytosol, endoplasmic reticulum	81.82	82.82
KRH34158	Soybean	cytosol, nucleus	81.21	82.21
GSMUA_Achr1P01390_001	Banana	cytosol	81.82	82.07
KRH68801	Soybean	cytosol, endoplasmic reticulum	80.3	82.04
KRH31706	Soybean	cytosol	83.94	81.95
GSMUA_Achr4P25210_001	Banana	cytosol	79.09	81.82
Solyc09g090060.2.1	Tomato	cytosol	81.82	81.82
PGSC0003DMT400044371	Potato	cytosol	81.82	81.82
VIT_05s0049g00890.t01	Wine grape	cytosol	80.3	81.29
KRH15048	Soybean	cytosol	77.27	80.95
KRH73092	Soybean	cytosol, nucleus	77.27	80.7
GSMUA_Achr11P...	Banana	cytosol	79.39	80.37
PGSC0003DMT400041996	Potato	cytosol	82.73	79.36
KRH59977	Soybean	nucleus	75.15	77.26
KRH41246	Soybean	nucleus	74.85	76.95
KRH51761	Soybean	cytosol, nucleus	70.3	76.82
KRH68493	Soybean	cytosol	69.7	70.99
KRG96778	Soybean	nucleus	69.7	61.33
KRH69421	Soybean	cytosol, nucleus	40.91	44.12
KRH74722	Soybean	cytosol, nucleus	40.91	44.12
KRH14305	Soybean	cytosol	40.91	43.83
KRH73826	Soybean	cytosol	40.91	43.83
KRG99209	Soybean	cytosol, nucleus	40.61	43.79
KRH45793	Soybean	cytosol, nucleus	40.61	43.79
KRH68078	Soybean	cytosol	40.0	42.17
KRG96343	Soybean	cytosol	40.0	42.17
KRH58904	Soybean	cytosol	39.7	42.12
KRH42814	Soybean	cytosol	39.7	42.12
KRH71796	Soybean	cytosol	39.7	41.72
KRH38026	Soybean	cytosol	39.7	41.72
KRH36176	Soybean	cytosol	35.76	38.94
KRG90576	Soybean	cytosol, nucleus	35.76	38.94
KRH36174	Soybean	cytosol, nucleus	35.76	38.94
KRH40922	Soybean	cytosol	33.64	36.16

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100791655	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02012739
InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_20G203900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	UniProt:I1NI31	InterPro:IPR029052	EnsemblPlants:KRG92313	ProteinID:KRG92313
ProteinID:KRG92313.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF306	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
UniParc:UPI000233DBAA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:44082302..44086966

Molecular Weight (calculated)

37673.4 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.235

Length

330 amino acids

Sequence
(BLAST)

001: MERGVLDSII NRLLEVRGRP GKQVQLSEAE IKQLCLVSRD IFLRQPNLLE LEAPIKICGD VHGQYSDLLR LFEYGGLPPR SNYLFLGDYV DRGKQSLETI
101: CLLLAYKIKY PNNFFLLRGN HECASINRIY GFYDECKRRY NVRLWKVFTE CFNCLPVAAL IDEKILCMHG GLSPELHNLN QIKSLPRPIE VPETGLLCDL
201: LWSDPSSDIR GWGENDRGVS YTFGADRVTE FLQKHDLDLI CRAHQVMEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMT VDETLVCSFQ ILKPVENKKP
301: NKFAFGSTTT VKHSTPTKTK FQQSFFGAKA

Best Arabidopsis Sequence Match ( AT5G43380.1 )
(BLAST)

001: MDPGTLNSVI NRLLEAREKP GKIVQLSETE IKQLCFVSRD IFLRQPNLLE LEAPVKICGD IHGQYPDLLR LFEHGGYPPN SNYLFLGDYV DRGKQSLETI
101: CLLLAYKIKF PENFFLLRGN HESASINRIY GFYDECKRRF SVKIWRIFTD CFNCLPVAAL IDERIFCMHG GLSPELLSLR QIRDIRRPTD IPDRGLLCDL
201: LWSDPDKDVR GWGPNDRGVS YTFGSDIVSG FLKRLDLDLI CRAHQVVEDG FEFFANKQLV TIFSAPNYCG EFDNAGAMMS VSEDLTCSFQ ILKSNDKKSK
301: FSFGSRGGAK TSFPYPKVKS ILSSQNSKEY N

Arabidopsis Description

TOPP7Serine/threonine-protein phosphatase PP1 isozyme 7 [Source:UniProtKB/Swiss-Prot;Acc:O82733]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.