CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15048	Soybean	cytosol	98.1	98.41
CDY61002	Canola	cytosol	90.51	89.94
CDY20490	Canola	cytosol	89.24	89.81
PGSC0003DMT400017290	Potato	cytosol	86.39	89.8
Solyc06g030490.2.1	Tomato	cytosol	86.39	89.8
AT2G39840.1	Thale cress	cytosol	90.82	89.41
CDY24946	Canola	cytosol	89.87	89.31
CDY10577	Canola	cytosol	81.96	89.0
VIT_13s0019g02410.t01	Wine grape	cytosol	87.97	88.82
Bra005009.1-P	Field mustard	cytosol	81.01	88.28
TraesCS4A01G093600.1	Wheat	cytosol	89.24	87.85
TraesCS4D01G211500.1	Wheat	cytosol	89.24	87.85
HORVU4Hr1G060490.1	Barley	cytosol	89.24	87.85
TraesCS4B01G210800.1	Wheat	cytosol	88.92	87.54
HORVU4Hr1G060530.1	Barley	mitochondrion, peroxisome	85.76	87.14
Os03t0268000-01	Rice	cytosol	88.29	86.65
EER95117	Sorghum	cytosol	87.03	85.4
Zm00001d047835_P003	Maize	cytosol, extracellular, plasma membrane	86.08	84.21
GSMUA_Achr8P19510_001	Banana	cytosol	73.42	83.15
KRG92623	Soybean	cytosol, endoplasmic reticulum	84.18	81.6
KRG97050	Soybean	cytosol	84.18	81.6
KRH34158	Soybean	cytosol, nucleus	83.86	81.29
KRH68801	Soybean	cytosol, endoplasmic reticulum	82.59	80.81
KRG92313	Soybean	cytosol, nucleus	80.7	77.27
KRH69127	Soybean	cytosol	77.85	77.12
KRH41246	Soybean	nucleus	77.53	76.32
KRH59977	Soybean	nucleus	77.22	76.01
KRH51761	Soybean	cytosol, nucleus	72.47	75.83
KRH31706	Soybean	cytosol	78.48	73.37
KRH34478	Soybean	cytosol	80.06	73.33
KRH68493	Soybean	cytosol	74.37	72.53
Zm00001d028568_P004	Maize	cytosol	87.66	67.56
KRG96778	Soybean	nucleus	74.37	62.67
Bra000153.1-P	Field mustard	cytosol	90.51	58.37
KRH45793	Soybean	cytosol, nucleus	43.67	45.1
KRG99209	Soybean	cytosol, nucleus	43.67	45.1
KRH69421	Soybean	cytosol, nucleus	43.35	44.77
KRH74722	Soybean	cytosol, nucleus	43.35	44.77
KRH73826	Soybean	cytosol	43.04	44.16
KRH14305	Soybean	cytosol	43.04	44.16
KRH68078	Soybean	cytosol	43.35	43.77
KRG96343	Soybean	cytosol	43.35	43.77
KRH58904	Soybean	cytosol	42.41	43.09
KRH42814	Soybean	cytosol	42.41	43.09
KRH71796	Soybean	cytosol	42.72	42.99
KRH38026	Soybean	cytosol	42.72	42.99
KRH36176	Soybean	cytosol	38.92	40.59
KRH36174	Soybean	cytosol, nucleus	38.92	40.59
KRG90576	Soybean	cytosol, nucleus	38.92	40.59
KRH40922	Soybean	cytosol	36.71	37.78

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100811593	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02001265
EMBL:BT097467	UniProt:C6TII4	InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_02G251600	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052	EnsemblPlants:KRH73092
ProteinID:KRH73092	ProteinID:KRH73092.1	ProteinID:KRH73093.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891
PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF403	SMART:SM00156	SUPFAM:SSF56300
InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0001B16BA9	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:43879082..43882801

Molecular Weight (calculated)

35949.4 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.145

Length

316 amino acids

Sequence
(BLAST)

001: MSTQGQVIID EAVLDDIIRR LTEVRLARPG KQVQLSESEI KQLCVASRDI FINQPNLLEL EAPIKICGDI HGQYSDLLRL FEYGGLPPTA NYLFLGDYVD
101: RGKQSLETIC LLLAYKIKYP ENFFLLRGNH ECASINRIYG FYDECKRRFN VRLWKAFTDC FNFLPVAALI DDKILCMHGG LSPELTNLDE IRNLPRPTAI
201: PDTGLLCDLL WSDPGRDVKG WGMNDRGVSY TFGPDKVAEF LTKHDLDLIC RAHQVVEDGY EFFADRQLVT IFSAPNYCGE FDNAGAMMSV DENLMCSFQI
301: LKPAEKKSKF VMSNKM

Best Arabidopsis Sequence Match ( AT2G39840.1 )
(BLAST)

001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I

Arabidopsis Description

TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.