Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
29338035
nucleus: 29338035 |
golgi:
25769308
|
gfp PMID:
29338035
doi
Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France., Laboratory of Biotechnology and Plant Improvement, Center of Biotechnology of Sfax, Sfax, Tunisia., Plant Molecular Genetics Department, Centro Nacional de Biotecnologia-CSIC (CNB-CSIC), Madrid, Spain., Plant Physiology and Functional Genomics Research Unit, Institute of Biotechnology, University of Sfax, Sfax, Tunisia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G093600.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS4B01G210800.1 | Wheat | cytosol | 99.69 | 99.69 |
| HORVU4Hr1G060490.1 | Barley | cytosol | 99.38 | 99.38 |
| Os03t0268000-01 | Rice | cytosol | 96.57 | 96.27 |
| HORVU4Hr1G060530.1 | Barley | mitochondrion, peroxisome | 91.9 | 94.86 |
| EER95117 | Sorghum | cytosol | 94.39 | 94.1 |
| Zm00001d047835_P003 | Maize | cytosol, extracellular, plasma membrane | 93.15 | 92.57 |
| KRH73092 | Soybean | cytosol, nucleus | 87.85 | 89.24 |
| CDY61002 | Canola | cytosol | 88.16 | 88.99 |
| KRH15048 | Soybean | cytosol | 86.92 | 88.57 |
| Solyc06g030490.2.1 | Tomato | cytosol | 83.8 | 88.49 |
| PGSC0003DMT400017290 | Potato | cytosol | 83.8 | 88.49 |
| CDY24946 | Canola | cytosol | 87.54 | 88.36 |
| AT2G39840.1 | Thale cress | cytosol | 88.16 | 88.16 |
| CDY20490 | Canola | cytosol | 85.67 | 87.58 |
| VIT_13s0019g02410.t01 | Wine grape | cytosol | 85.36 | 87.54 |
| VIT_06s0004g05530.t01 | Wine grape | cytosol | 81.93 | 87.38 |
| CDY10577 | Canola | cytosol | 78.82 | 86.94 |
| GSMUA_Achr8P19510_001 | Banana | cytosol | 75.39 | 86.74 |
| CDY71651 | Canola | cytosol | 59.5 | 86.43 |
| CDX88683 | Canola | cytosol | 83.18 | 86.41 |
| AT5G59160.1 | Thale cress | cytosol | 83.8 | 86.22 |
| Bra005009.1-P | Field mustard | cytosol | 77.88 | 86.21 |
| Solyc06g076430.2.1 | Tomato | cytosol, nucleus | 82.87 | 85.81 |
| CDX71136 | Canola | cytosol | 82.55 | 85.76 |
| CDY32662 | Canola | cytosol | 83.18 | 85.58 |
| Bra020335.1-P | Field mustard | cytosol | 83.18 | 85.58 |
| Bra002590.1-P | Field mustard | cytosol | 82.87 | 85.53 |
| PGSC0003DMT400078199 | Potato | cytosol | 82.55 | 85.48 |
| Bra006731.1-P | Field mustard | cytosol | 82.24 | 85.44 |
| CDY33013 | Canola | cytosol | 80.37 | 84.31 |
| CDX80301 | Canola | cytosol | 79.75 | 83.66 |
| CDY02866 | Canola | cytosol | 83.49 | 82.97 |
| Solyc06g005800.2.1 | Tomato | cytosol, nucleus | 82.24 | 82.76 |
| AT2G29400.1 | Thale cress | cytosol | 81.62 | 82.39 |
| AT3G46820.1 | Thale cress | cytosol | 80.06 | 82.37 |
| Bra018397.1-P | Field mustard | cytosol | 78.19 | 82.3 |
| Bra018191.1-P | Field mustard | cytosol | 79.44 | 82.26 |
| TraesCS6D01G381300.1 | Wheat | cytosol | 80.37 | 81.65 |
| Bra000475.1-P | Field mustard | cytosol | 80.37 | 81.13 |
| CDX83308 | Canola | cytosol | 80.37 | 81.13 |
| CDY40180 | Canola | cytosol | 80.06 | 81.07 |
| CDX95749 | Canola | cytosol | 80.06 | 80.31 |
| CDY45437 | Canola | cytosol | 79.75 | 80.25 |
| PGSC0003DMT400053683 | Potato | cytosol | 65.11 | 80.08 |
| CDX86100 | Canola | cytosol | 76.01 | 79.74 |
| TraesCS7D01G124400.1 | Wheat | cytosol | 79.13 | 79.13 |
| TraesCS6D01G388000.1 | Wheat | cytosol | 74.45 | 78.62 |
| Zm00001d028568_P004 | Maize | cytosol | 95.64 | 74.88 |
| TraesCS5D01G549800.1 | Wheat | cytosol | 71.96 | 71.08 |
| TraesCS3D01G199300.1 | Wheat | cytosol | 70.09 | 69.23 |
| TraesCS1D01G104400.1 | Wheat | cytosol | 69.78 | 68.92 |
| Bra000153.1-P | Field mustard | cytosol | 88.16 | 57.76 |
| TraesCS5D01G465400.1 | Wheat | golgi | 42.68 | 44.63 |
| TraesCS5D01G278600.1 | Wheat | cytosol | 41.12 | 44.44 |
| TraesCS6D01G171400.1 | Wheat | cytosol | 41.74 | 43.79 |
| TraesCS7D01G358600.1 | Wheat | cytosol | 41.43 | 43.46 |
| TraesCS5D01G180100.1 | Wheat | cytosol | 41.43 | 43.32 |
| TraesCS4D01G282100.1 | Wheat | cytosol | 41.43 | 42.49 |
| TraesCS3D01G261300.1 | Wheat | cytosol | 37.69 | 39.93 |
| TraesCS1D01G380200.1 | Wheat | cytosol | 37.38 | 39.6 |
| CDX89311 | Canola | cytosol, plastid | 26.17 | 12.17 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.1.1 | Gene3D:3.60.21.10 | InterPro:Calcineurin-like_PHP_ApaH | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016787 | InterPro:IPR029052 | InterPro:Metallo-depent_PP-like | PFAM:PF00149 | PFAM:PF16891 |
| PRINTS:PR00114 | ScanProsite:PS00125 | PANTHER:PTHR11668 | PANTHER:PTHR11668:SF403 | SMART:SM00156 | SUPFAM:SSF56300 |
| InterPro:STPPase_N | InterPro:Ser/Thr-sp_prot-phosphatase | EnsemblPlantsGene:TraesCS4D01G211500 | EnsemblPlants:TraesCS4D01G211500.1 | TIGR:cd07414 | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:363925511..363927997
Molecular Weight (calculated)
36172.6 Da
IEP (calculated)
4.980
GRAVY (calculated)
-0.138
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPAAGGQ GGGMDAALLD DIIRRLLEVR TARPGKQVQL SESEIRQLCT ASRDIFLTQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPEANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPENFFL LRGNHECASI NRIYGFYDEC KRRFNVRLWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL GHLDEIKNLP
201: RPTDVPDTGL LCDLLWSDPG KDVQGWGMND RGVSYTFGHD KVTEFLLKHD LDLICRAHQV VEDGYEFFAD RQLVTIFSAP NYCGEFDNAG AMMSVDETLM
301: CSFQILKPAE RKIKFMASNK M
101: GDYVDRGKQS LETICLLLAY KIKYPENFFL LRGNHECASI NRIYGFYDEC KRRFNVRLWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL GHLDEIKNLP
201: RPTDVPDTGL LCDLLWSDPG KDVQGWGMND RGVSYTFGHD KVTEFLLKHD LDLICRAHQV VEDGYEFFAD RQLVTIFSAP NYCGEFDNAG AMMSVDETLM
301: CSFQILKPAE RKIKFMASNK M
001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I
Arabidopsis Description
TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.