Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24946 | Canola | cytosol | 98.44 | 99.37 |
| CDY61002 | Canola | cytosol | 98.13 | 99.06 |
| CDY20490 | Canola | cytosol | 94.39 | 96.5 |
| CDY10577 | Canola | cytosol | 86.92 | 95.88 |
| Bra005009.1-P | Field mustard | cytosol | 86.29 | 95.52 |
| KRH73092 | Soybean | cytosol, nucleus | 89.41 | 90.82 |
| KRH15048 | Soybean | cytosol | 89.1 | 90.79 |
| PGSC0003DMT400017290 | Potato | cytosol | 85.05 | 89.8 |
| Solyc06g030490.2.1 | Tomato | cytosol | 85.05 | 89.8 |
| VIT_13s0019g02410.t01 | Wine grape | cytosol | 87.23 | 89.46 |
| HORVU4Hr1G060490.1 | Barley | cytosol | 88.16 | 88.16 |
| TraesCS4A01G093600.1 | Wheat | cytosol | 88.16 | 88.16 |
| TraesCS4D01G211500.1 | Wheat | cytosol | 88.16 | 88.16 |
| TraesCS4B01G210800.1 | Wheat | cytosol | 87.85 | 87.85 |
| Os03t0268000-01 | Rice | cytosol | 87.54 | 87.27 |
| HORVU4Hr1G060530.1 | Barley | mitochondrion, peroxisome | 84.42 | 87.14 |
| EER95117 | Sorghum | cytosol | 85.98 | 85.71 |
| GSMUA_Achr8P19510_001 | Banana | cytosol | 73.83 | 84.95 |
| Zm00001d047835_P003 | Maize | cytosol, extracellular, plasma membrane | 85.05 | 84.52 |
| AT5G59160.1 | Thale cress | cytosol | 80.37 | 82.69 |
| AT2G29400.1 | Thale cress | cytosol | 80.69 | 81.45 |
| AT3G46820.1 | Thale cress | cytosol | 77.57 | 79.81 |
| AT1G64040.1 | Thale cress | cytosol | 76.01 | 75.78 |
| AT3G05580.1 | Thale cress | cytosol | 72.27 | 72.96 |
| AT4G11240.1 | Thale cress | cytosol | 71.65 | 71.43 |
| AT5G43380.1 | Thale cress | cytosol | 73.52 | 71.3 |
| AT5G27840.4 | Thale cress | cytosol | 72.59 | 70.61 |
| Zm00001d028568_P004 | Maize | cytosol | 86.6 | 67.8 |
| Bra000153.1-P | Field mustard | cytosol | 97.51 | 63.88 |
| AT1G69960.1 | Thale cress | cytosol | 43.3 | 45.28 |
| AT1G10430.1 | Thale cress | cytosol | 42.99 | 45.1 |
| AT1G59830.1 | Thale cress | cytosol | 42.68 | 44.77 |
| AT2G42500.1 | Thale cress | cytosol | 42.37 | 43.45 |
| AT4G26720.1 | Thale cress | cytosol | 41.12 | 43.28 |
| AT3G58500.1 | Thale cress | cytosol | 41.74 | 42.81 |
| AT3G19980.1 | Thale cress | cytosol | 38.94 | 41.25 |
| AT1G50370.1 | Thale cress | cytosol | 38.63 | 40.92 |
| AT5G55260.2 | Thale cress | cytosol | 42.99 | 39.88 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.1.1 | Gene3D:3.60.21.10 | EntrezGene:818571 | UniProt:A0A178VUA1 |
| ProteinID:AAB87136.1 | ProteinID:AEC09737.1 | EMBL:AK229028 | ArrayExpress:AT2G39840 | EnsemblPlantsGene:AT2G39840 | RefSeq:AT2G39840 |
| TAIR:AT2G39840 | RefSeq:AT2G39840-TAIR-G | EnsemblPlants:AT2G39840.1 | TAIR:AT2G39840.1 | EMBL:BT026118 | InterPro:Calcineurin-like_PHP_ApaH |
| GO:GO:0000164 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004721 | GO:GO:0004722 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006468 | GO:GO:0006470 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010161 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0040007 | GO:GO:0040008 | GO:GO:0046872 | InterPro:IPR029052 | EMBL:M93411 | InterPro:Metallo-depent_PP-like |
| RefSeq:NP_181514.1 | ProteinID:OAP08593.1 | UniProt:P48484 | PFAM:PF00149 | PFAM:PF16891 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00114 |
| ScanProsite:PS00125 | PANTHER:PTHR11668 | PANTHER:PTHR11668:SF403 | SMART:SM00156 | SUPFAM:SSF56300 | InterPro:STPPase_N |
| InterPro:Ser/Thr-sp_prot-phosphatase | Symbol:TOPP4 | UniParc:UPI0000131FB4 | SEG:seg | : | : |
Description
TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
Coordinates
chr2:+:16627216..16629412
Molecular Weight (calculated)
36373.9 Da
IEP (calculated)
5.234
GRAVY (calculated)
-0.170
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.