Factsheet for Solyc06g005800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053683	Potato	cytosol	81.82	100.0
Solyc06g076430.2.1	Tomato	cytosol, nucleus	91.85	94.52
CDY71651	Canola	cytosol	61.76	89.14
VIT_06s0004g05530.t01	Wine grape	cytosol	81.19	86.05
CDX88683	Canola	cytosol	83.07	85.76
AT5G59160.1	Thale cress	cytosol	83.7	85.58
Bra006731.1-P	Field mustard	cytosol	82.76	85.44
CDY32662	Canola	cytosol	83.39	85.26
Bra020335.1-P	Field mustard	cytosol	83.39	85.26
CDX71136	Canola	cytosol	82.45	85.11
Bra002590.1-P	Field mustard	cytosol	82.76	84.89
Solyc06g030490.2.1	Tomato	cytosol	79.62	83.55
CDX80301	Canola	cytosol	79.94	83.33
CDY33013	Canola	cytosol	79.94	83.33
AT3G46820.1	Thale cress	cytosol	81.19	83.01
Bra018397.1-P	Field mustard	cytosol	79.31	82.95
Bra018191.1-P	Field mustard	cytosol	80.56	82.9
TraesCS4A01G093600.1	Wheat	cytosol	82.76	82.24
TraesCS4D01G211500.1	Wheat	cytosol	82.76	82.24
HORVU4Hr1G060490.1	Barley	cytosol	82.76	82.24
AT2G29400.1	Thale cress	cytosol	81.82	82.08
CDY02866	Canola	cytosol	83.07	82.04
TraesCS4B01G210800.1	Wheat	cytosol	82.45	81.93
Os03t0268000-01	Rice	cytosol	82.45	81.68
HORVU4Hr1G060530.1	Barley	mitochondrion, peroxisome	79.62	81.67
Bra000475.1-P	Field mustard	cytosol	80.88	81.13
CDX83308	Canola	cytosol	80.88	81.13
EER95117	Sorghum	cytosol	81.82	81.06
Zm00001d047835_P003	Maize	cytosol, extracellular, plasma membrane	81.82	80.81
CDX86100	Canola	cytosol	77.43	80.72
CDX95749	Canola	cytosol	80.88	80.62
CDY40180	Canola	cytosol	79.94	80.44
GSMUA_Achr8P19510_001	Banana	cytosol	70.22	80.29
CDY45437	Canola	cytosol	80.25	80.25
Solyc06g053630.2.1	Tomato	cytosol	80.25	79.5
Solyc09g090060.2.1	Tomato	cytosol	79.62	76.97
Solyc05g055060.2.1	Tomato	cytosol, nucleus	78.37	76.92
Solyc01g099860.2.1	Tomato	cytosol, unclear	69.59	70.48
Zm00001d028568_P004	Maize	cytosol	82.13	63.9
Solyc01g034020.2.1	Tomato	cytosol	42.63	44.44
Solyc05g006590.2.1	Tomato	cytosol	42.32	44.12
Solyc01g011340.2.1	Tomato	cytosol, plastid	42.32	44.12
Solyc07g065020.2.1	Tomato	cytosol	41.69	43.61
Solyc01g073650.2.1	Tomato	cytosol	42.63	43.59
Solyc01g005950.2.1	Tomato	cytosol, extracellular	42.32	43.13
Solyc06g072140.2.1	Tomato	cytosol	38.56	40.59
Solyc03g019900.2.1	Tomato	cytosol	37.93	39.93
CDX89311	Canola	cytosol, plastid	24.45	11.3

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052
UniProt:K4C362	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF392	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
EnsemblPlantsGene:Solyc06g005800.2	EnsemblPlants:Solyc06g005800.2.1	UniParc:UPI0002765D32	SEG:seg	:	:

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:K4C362]

Coordinates

chr6:-:831375..835231

Molecular Weight (calculated)

36663.0 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.264

Length

319 amino acids

Sequence
(BLAST)

001: MAQNEHQQQQ QQQQGLIEPA VLDDIINRLL EFRNARTVRQ VQISEAEIRS LCSASREIFL QQPNLLELEA PIKICGDIHG QYGDLLRLFE YGGFPPEANY
101: LFLGDYVDRG KQSLETICLL LAYKIKYPEN FFLLRGNHEC ASINRIYGFY DECKRRFNVK LWKCFTECFN CLPVAALIDE KILCMHGGLS PDLTNLDQIR
201: NLPRPTDVPD SGLLCDLLWS DPSREVKGWG MNDRGVSYTF GPDKVAEFLM QHDMDLVCRA HQVVEDGYEF FAERQLVTIF SAPNYCGEFD NAGAMMSVDE
301: SLMCSFQILK PTDRKPRFL

Best Arabidopsis Sequence Match ( AT5G59160.3 )
(BLAST)

001: MAQQGQGSMD PAALDDIIRR LLDYRNPKPG TKQAMLNESE IRQLCIVSRE IFLQQPNLLE LEAPIKICGD IHGQYSDLLR LFEYGGFPPT ANYLFLGDYV
101: DRGKQSLETI CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF SVRLWKVFTD SFNCLPVAAV IDDKILCMHG GLSPDLTNVE QIKNIKRPTD
201: VPDSGLLCDL LWSDPSKDVK GWGMNDRGVS YTFGPDKVAE FLIKNDMDLI CRAHQVVEDG YEFFADRQLV TIFSAPNYCG EFDNAGAMMS VDESLMCSFQ
301: ILKPADRKPR FL

Arabidopsis Description

TOPP2Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UGI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.