Factsheet for VIT_06s0004g05530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88683	Canola	cytosol	86.38	84.14
CDY71651	Canola	cytosol	61.46	83.71
Bra018397.1-P	Field mustard	cytosol	84.72	83.61
CDX71136	Canola	cytosol	85.71	83.5
CDY32662	Canola	cytosol	86.38	83.33
Bra020335.1-P	Field mustard	cytosol	86.38	83.33
Bra006731.1-P	Field mustard	cytosol	85.38	83.17
VIT_13s0019g02410.t01	Wine grape	cytosol	86.38	83.07
AT5G59160.1	Thale cress	cytosol	86.05	83.01
Os03t0268000-01	Rice	cytosol	88.7	82.92
CDX80301	Canola	cytosol	84.05	82.68
CDY33013	Canola	cytosol	84.05	82.68
Bra002590.1-P	Field mustard	cytosol	85.38	82.64
HORVU4Hr1G060530.1	Barley	mitochondrion, peroxisome	85.05	82.32
Solyc06g076430.2.1	Tomato	cytosol, nucleus	84.72	82.26
TraesCS4B01G210800.1	Wheat	cytosol	87.71	82.24
PGSC0003DMT400078199	Potato	cytosol	84.39	81.94
TraesCS4D01G211500.1	Wheat	cytosol	87.38	81.93
TraesCS4A01G093600.1	Wheat	cytosol	87.38	81.93
HORVU4Hr1G060490.1	Barley	cytosol	87.38	81.93
EER95117	Sorghum	cytosol	87.04	81.37
Solyc06g005800.2.1	Tomato	cytosol, nucleus	86.05	81.19
CDX83308	Canola	cytosol	85.71	81.13
Bra000475.1-P	Field mustard	cytosol	85.71	81.13
GSMUA_Achr8P19510_001	Banana	cytosol	75.08	81.0
AT2G29400.1	Thale cress	cytosol	85.38	80.82
CDY02866	Canola	cytosol	86.38	80.5
CDX95749	Canola	cytosol	85.38	80.31
AT3G46820.1	Thale cress	cytosol	83.06	80.13
CDY45437	Canola	cytosol	84.72	79.94
Zm00001d047835_P003	Maize	cytosol, extracellular, plasma membrane	85.71	79.88
CDY40180	Canola	cytosol	84.05	79.81
VIT_08s0056g00220.t01	Wine grape	cytosol	78.07	79.12
Bra018191.1-P	Field mustard	cytosol	81.4	79.03
PGSC0003DMT400053683	Potato	cytosol	67.77	78.16
CDX86100	Canola	cytosol	78.41	77.12
VIT_05s0049g00890.t01	Wine grape	cytosol	83.39	76.99
VIT_02s0025g00480.t01	Wine grape	cytosol	81.4	76.8
VIT_14s0036g00370.t01	Wine grape	cytosol	86.71	71.9
VIT_14s0060g01750.t01	Wine grape	cytosol	75.75	70.15
Zm00001d028568_P004	Maize	cytosol	87.71	64.39
VIT_19s0090g01290.t01	Wine grape	cytosol	44.85	44.26
VIT_01s0026g01080.t01	Wine grape	cytosol	44.85	44.12
VIT_14s0066g02240.t01	Wine grape	cytosol	44.19	43.46
VIT_17s0000g05330.t01	Wine grape	cytosol	43.85	43.14
VIT_06s0004g00830.t01	Wine grape	cytosol	44.52	42.68
VIT_10s0071g00950.t01	Wine grape	cytosol	41.2	40.92
VIT_13s0156g00060.t01	Wine grape	cytosol	44.19	33.42

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100250219	wikigene:100250219	MapMan:18.4.24.1.1	Gene3D:3.60.21.10
EMBL:AM478924	ProteinID:CAN75205	ProteinID:CAN75205.1	ProteinID:CBI16052	ProteinID:CBI16052.3	InterPro:Calcineurin-like_PHP_ApaH
UniProt:D7SK76	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	InterPro:IPR029052	EntrezGene:LOC100250219	wikigene:LOC100250219	InterPro:Metallo-depent_PP-like
PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF405
SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI00015C7FD5	ArrayExpress:VIT_06s0004g05530
EnsemblPlantsGene:VIT_06s0004g05530	EnsemblPlants:VIT_06s0004g05530.t01	RefSeq:XP_002280394	RefSeq:XP_002280394.2	RefSeq:XP_010650977.1	RefSeq:XP_010650978.1

Description

Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:D7SK76]

Coordinates

chr6:-:6364020..6368120

Molecular Weight (calculated)

34466.6 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.185

Length

301 amino acids

Sequence
(BLAST)

001: MAQMESGVLD DIIDRLMEFR QGKSGKQVPL MESEIRQLCT VSREIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFDYGG YPPEANYLFL GDYVDRGKQS
101: LETICLLLAY KIKYPENFFL LRGNHECASI NRIYGFYDEC KRRFNVRLWK TFTDCFNCLP VAALIDDKIL CMHGGLSPEL TNLDQIRKLS RPTDVPDSGL
201: LCDLLWSDPG RDIKGWGMND RGVSFTFGPD KVSEFLSKHD MDLICRAHQV VEDGYEFFAD RQLVTIFSAP NYCGEFDNAG AMMSVDESLM CSFQILKPKF
301: M

Best Arabidopsis Sequence Match ( AT2G39840.1 )
(BLAST)

001: MATTTTTQGQ QTAIDSAVLD DIIRRLTEVR LARPGKQVQL SEAEIKQLCT TARDIFLQQP NLLELEAPIK ICGDIHGQYS DLLRLFEYGG FPPSANYLFL
101: GDYVDRGKQS LETICLLLAY KIKYPGNFFL LRGNHECASI NRIYGFYDEC KRRFNVRVWK VFTDCFNCLP VAALIDDKIL CMHGGLSPDL DHLDEIRNLP
201: RPTMIPDTGL LCDLLWSDPG KDVKGWGMND RGVSYTFGPD KVSEFLTKHD LDLVCRAHQV VEDGYEFFAD RQLVTVFSAP NYCGEFDNAG AMMSVDENLM
301: CSFQILKPAE KKTKFMMSTK I

Arabidopsis Description

TOPP4Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VUA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.