CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0056g00220.t01	Wine grape	cytosol	85.76	87.21
GSMUA_Achr4P09690_001	Banana	cytosol	82.45	80.84
Os08t0455600-01	Rice	cytosol, plasma membrane	81.79	80.46
Zm00001d032076_P002	Maize	cytosol	80.13	79.61
TraesCS6D01G388000.1	Wheat	cytosol	80.13	79.61
TraesCS6A01G404700.1	Wheat	cytosol	80.13	79.61
EES13960	Sorghum	cytosol	80.13	79.34
TraesCS6B01G449000.1	Wheat	cytosol	79.8	79.28
GSMUA_Achr8P24570_001	Banana	cytosol	79.47	78.43
KRH73092	Soybean	cytosol, nucleus	75.83	72.47
KRH34158	Soybean	cytosol, nucleus	77.81	72.09
KRG97050	Soybean	cytosol	77.48	71.78
KRG92623	Soybean	cytosol, endoplasmic reticulum	77.48	71.78
KRH15048	Soybean	cytosol	74.83	71.75
KRH68801	Soybean	cytosol, endoplasmic reticulum	76.16	71.21
KRH59977	Soybean	nucleus	75.5	71.03
KRH41246	Soybean	nucleus	75.17	70.72
KRH69127	Soybean	cytosol	74.5	70.53
KRG92313	Soybean	cytosol, nucleus	76.82	70.3
KRH31706	Soybean	cytosol	75.5	67.46
KRH68493	Soybean	cytosol	71.19	66.36
KRH34478	Soybean	cytosol	75.5	66.09
HORVU6Hr1G092760.2	Barley	cytosol	66.89	64.54
KRG96778	Soybean	nucleus	70.86	57.07
KRH69421	Soybean	cytosol, nucleus	43.05	42.48
KRH45793	Soybean	cytosol, nucleus	43.05	42.48
KRG99209	Soybean	cytosol, nucleus	43.05	42.48
KRH58904	Soybean	cytosol	43.71	42.44
KRH42814	Soybean	cytosol	43.71	42.44
KRH68078	Soybean	cytosol	43.71	42.17
KRG96343	Soybean	cytosol	43.71	42.17
KRH71796	Soybean	cytosol	43.71	42.04
KRH38026	Soybean	cytosol	43.71	42.04
KRH74722	Soybean	cytosol, nucleus	42.38	41.83
KRH73826	Soybean	cytosol	42.38	41.56
KRH14305	Soybean	cytosol	42.38	41.56
KRG90576	Soybean	cytosol, nucleus	39.07	38.94
KRH36176	Soybean	cytosol	39.07	38.94
KRH36174	Soybean	cytosol, nucleus	39.07	38.94
KRH40922	Soybean	cytosol	37.42	36.81

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100804212	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	EMBL:ACUP02003388
InterPro:Calcineurin-like_PHP_ApaH	EnsemblPlantsGene:GLYMA_06G027300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	UniProt:I1K7M5	InterPro:IPR029052	EnsemblPlants:KRH51761	ProteinID:KRH51761
ProteinID:KRH51761.1	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114	ScanProsite:PS00125
PANTHER:PTHR11668	PANTHER:PTHR11668:SF294	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N	InterPro:Ser/Thr-sp_prot-phosphatase
UniParc:UPI00023C3841	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:2111883..2113374

Molecular Weight (calculated)

34334.3 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.145

Length

302 amino acids

Sequence
(BLAST)

001: MEGLDGLIER LLEVRKNRGK QIQLVESEIR SLCSTAKDLF LRQPNLLELE APINVCGDIH GQYPDLLRVL EYGGFPPDSN YLFLGDYVDR GKQSVETICL
101: LLAYKIKYPE NFFLLRGNHE CASINRIYGF YDECKRRFSV RLWKIFTDCF NCLPVAAVID DKILCMHGGL SPDMESLNQI KAIERPVDVP DQGLLCDLLW
201: ADPDNEISGW GENDRGVSYT FGPDKVSEFL KKHDLDLICR AHQVVEDGYQ FFADRQLVTI FSAPNYCGEF NNAGALMCVD QTLLCSFQIV KPFGTFRGKL
301: TS

Best Arabidopsis Sequence Match ( AT2G29400.1 )
(BLAST)

001: MAEKPAQEQE QKRAMEPAVL DDIIRRLVEF RNTRPGSGKQ VHLSEGEIRQ LCAVSKEIFL QQPNLLELEA PIKICGDIHG QYSDLLRLFE YGGFPPEANY
101: LFLGDYVDRG KQSLETICLL LAYKIKYPEN FFLLRGNHES ASINRIYGFY DECKRRFNVR LWKIFTDCFN CLPVAALIDD RILCMHGGIS PELKSLDQIR
201: NIARPMDIPE SGLVCDLLWS DPSGDVGWGM NDRGVSYTFG ADKVAEFLEK HDMDLICRAH QVVEDGYEFF AERQLVTVFS APNYCGEFDN AGAMMSIDES
301: LMCSFQILKP SEKKSPFL

Arabidopsis Description

TOPP1Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VXL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.