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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • vacuole 3
  • mitochondrion 2
  • peroxisome 1
  • nucleus 1
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:cytosol, nucleus
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG91469
KRH09088
KRH35346
KRH38536

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05580.1 KRG91469 AT5G52200.1 21798944
AT3G05580.1 KRH09088 AT5G52200.1 21798944
AT3G05580.1 KRH35346 AT5G52200.1 21798944
AT3G05580.1 KRH38536 AT5G52200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH68493 Soybean cytosol 85.33 98.77
AT3G05580.1 Thale cress cytosol 75.47 88.99
CDX80617 Canola cytosol 75.47 88.71
Bra009941.1-P Field mustard cytosol 75.2 88.4
VIT_14s0060g01750.t01 Wine grape cytosol 75.47 87.08
CDY05182 Canola cytosol 74.4 86.92
CDY27754 Canola cytosol 74.4 86.92
Bra001155.1-P Field mustard cytosol 73.6 86.79
CDY18815 Canola cytosol 73.6 86.79
CDY25019 Canola cytosol 73.6 86.79
CDX86135 Canola cytosol 58.67 86.61
Bra039424.1-P Field mustard cytosol 74.13 86.6
Bra040535.1-P Field mustard cytosol 73.33 86.48
CDY05560 Canola cytosol 73.33 86.48
PGSC0003DMT400063710 Potato cytosol 71.73 85.4
Solyc01g099860.2.1 Tomato cytosol, unclear 71.73 85.4
AT5G27840.4 Thale cress cytosol 74.93 85.15
CDY40717 Canola cytosol 76.8 79.12
Bra020573.1-P Field mustard cytosol 72.27 78.78
KRH15048 Soybean cytosol 63.47 75.56
GSMUA_Achr11P... Banana cytosol 63.47 75.32
CDX74139 Canola cytosol 75.2 75.0
KRH73092 Soybean cytosol, nucleus 62.67 74.37
EES02921 Sorghum cytosol 63.73 73.54
TraesCS1D01G104400.1 Wheat cytosol 63.2 72.92
TraesCS1B01G128100.1 Wheat cytosol 63.2 72.92
TraesCS1A01G095500.1 Wheat cytosol 63.2 72.92
GSMUA_Achr2P02240_001 Banana cytosol 62.4 72.9
KRH68801 Soybean cytosol, endoplasmic reticulum 62.67 72.76
Os01t0349400-01 Rice cytosol 62.93 72.62
KRG92623 Soybean cytosol, endoplasmic reticulum 62.93 72.39
KRG97050 Soybean cytosol 62.93 72.39
Zm00001d037601_P001 Maize cytosol 57.87 72.33
KRH59977 Soybean nucleus 61.6 71.96
HORVU1Hr1G022370.5 Barley cytosol 62.4 71.78
KRH34158 Soybean cytosol, nucleus 62.4 71.78
KRH41246 Soybean nucleus 61.33 71.65
TraesCS3D01G199300.1 Wheat cytosol 61.87 71.38
KRH51761 Soybean cytosol, nucleus 57.07 70.86
GSMUA_Achr8P06590_001 Banana cytosol 52.8 70.71
KRG92313 Soybean cytosol, nucleus 61.33 69.7
KRH69127 Soybean cytosol 59.2 69.59
Zm00001d009844_P001 Maize cytosol 62.67 69.53
GSMUA_Achr11P... Banana cytosol 64.0 67.99
KRH31706 Soybean cytosol 60.53 67.16
TraesCS3A01G195500.1 Wheat cytosol 61.87 67.05
TraesCS3B01G226800.1 Wheat cytosol 61.6 66.0
KRH34478 Soybean cytosol 60.53 65.8
HORVU3Hr1G044550.3 Barley cytosol 49.33 61.87
Zm00001d009181_P005 Maize cytosol 52.8 53.8
OQU77459 Sorghum cytosol 65.07 51.37
KRH14305 Soybean cytosol 37.33 45.45
KRH73826 Soybean cytosol 37.33 45.45
KRG99209 Soybean cytosol, nucleus 37.07 45.42
KRH45793 Soybean cytosol, nucleus 37.07 45.42
KRH74722 Soybean cytosol, nucleus 36.8 45.1
KRH69421 Soybean cytosol, nucleus 36.8 45.1
KRG96343 Soybean cytosol 37.33 44.73
KRH68078 Soybean cytosol 37.33 44.73
KRH58904 Soybean cytosol 37.07 44.69
KRH42814 Soybean cytosol 37.07 44.69
KRH71796 Soybean cytosol 37.33 44.59
KRH38026 Soybean cytosol 37.33 44.59
KRG90576 Soybean cytosol, nucleus 33.87 41.91
KRH36176 Soybean cytosol 33.87 41.91
KRH36174 Soybean cytosol, nucleus 33.87 41.91
KRH40922 Soybean cytosol 32.0 39.09
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16EntrezGene:100813792MapMan:18.4.24.1.1Gene3D:3.60.21.10EMBL:ACUP02012162
InterPro:Calcineurin-like_PHP_ApaHEnsemblPlantsGene:GLYMA_19G232300GO:GO:0003674GO:GO:0003824GO:GO:0004721GO:GO:0005488
GO:GO:0005575GO:GO:0006464GO:GO:0006470GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538GO:GO:0046872UniProt:I1NBW2
InterPro:IPR029052EnsemblPlants:KRG96778ProteinID:KRG96778ProteinID:KRG96778.1InterPro:Metallo-depent_PP-likePFAM:PF00149
PFAM:PF16891PIRSF:PIRSF033096PRINTS:PR00114ScanProsite:PS00125PANTHER:PTHR11668PANTHER:PTHR11668:SF262
SMART:SM00156SUPFAM:SSF56300InterPro:STPPase_NInterPro:Ser/Thr-sp_prot-phosphataseTMHMM:TMhelixUniParc:UPI000233E77F
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr19:+:48249521..48252959
Molecular Weight (calculated)
42747.1 Da
IEP (calculated)
7.856
GRAVY (calculated)
-0.125
Length
375 amino acids
Sequence
(BLAST)
001: MLRLGHLVHL SKFPHPATNL FIYFSFIYLL SLARASKRVV FFFYKKKRRG KMMMMTMEGM MDKGVLDDVI RRLLEGKGGK QVQLSESEIR QLCVNARQIF
101: LSQPILLDLR APIRICGDIH GQYQDLLRLF EYGGYPPAAN YLFLGDYVDR GKQSLETICL LLAYKIRYPD KIYLLRGNHE EAKINRIYGF YDECKRRFNV
201: RLWKIFTDCF NCLPVAALID EKILCMHGGL SPELENLDQI REIQRPTEIP DSGLLCDLLW SDPDASIEGW AESDRGVSCT FGADVVAEFL DKNDVDLVCR
301: GHQVVEDGYE FFAKRRLVTI FSAPNYGGEF DNAGALLSVD DSLVCSFEIL KPADRASGSG SSKMNFKKPP KLGKI
Best Arabidopsis Sequence Match ( AT5G27840.1 )
(BLAST)
001: MMTSMEGMVE KGVLDDIIRR LLEGKGGKQV QLSESEIRQL CFNARQIFLS QPNLLDLHAP IRICGDIHGQ YQDLLRLFEY GGYPPSANYL FLGDYVDRGK
101: QSLETICLLL AYKIRYPSKI YLLRGNHEDA KINRIYGFYD ECKRRFNVRL WKVFTDCFNC LPVAALIDEK ILCMHGGLSP DLDNLNQIRE IQRPIEIPDS
201: GLLCDLLWSD PDQKIEGWAD SDRGISCTFG ADKVAEFLDK NDLDLICRGH QVVEDGYEFF AKRRLVTIFS APNYGGEFDN AGALLSVDES LVCSFEIMKP
301: APASSSHPLK KVPKMGKS
Arabidopsis Description
TOPP8Calcineurin-like metallo-phosphoesterase superfamily protein [Source:TAIR;Acc:AT5G27840]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.