CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69038
CDX69649
CDX72207
CDX81207
CDX81375
CDX81376
CDY09785
CDY18334
CDY24187
CDY31896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11240.1	CDX69038	AT5G13310.1	21798944
AT4G11240.1	CDX69649	AT5G13310.1	21798944
AT4G11240.1	CDX72207	AT5G13310.1	21798944
AT4G11240.1	CDX81207	AT5G13310.1	21798944
AT4G11240.1	CDX81375	AT5G13310.1	21798944
AT4G11240.1	CDX81376	AT5G13310.1	21798944
AT4G11240.1	CDY09785	AT5G13310.1	21798944
AT4G11240.1	CDY18334	AT5G13310.1	21798944
AT4G11240.1	CDY24187	AT5G13310.1	21798944
AT4G11240.1	CDY31896	AT5G13310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035240.1-P	Field mustard	cytosol	100.0	100.0
CDY13242	Canola	cytosol	98.44	98.44
CDX90793	Canola	cytosol	92.81	92.24
CDY05136	Canola	cytosol	92.5	91.93
AT4G11240.1	Thale cress	cytosol	90.31	89.75
KRH41246	Soybean	nucleus	85.94	85.67
KRH59977	Soybean	nucleus	85.62	85.36
VIT_02s0025g00480.t01	Wine grape	cytosol	85.0	85.27
GSMUA_Achr2P15380_001	Banana	cytosol	83.12	83.39
GSMUA_Achr10P...	Banana	cytosol	80.94	80.94
CDY25556	Canola	cytosol	80.94	80.69
CDY34395	Canola	cytosol	80.94	80.69
HORVU7Hr1G026400.1	Barley	cytosol	80.0	79.75
Os06t0164100-02	Rice	cytosol, nucleus, plasma membrane	80.0	79.5
TraesCS7D01G124400.1	Wheat	cytosol	79.69	79.44
TraesCS7B01G025800.1	Wheat	cytosol	79.69	79.44
TraesCS7A01G126500.1	Wheat	cytosol	79.69	79.44
CDY71651	Canola	cytosol	54.69	79.19
Zm00001d045213_P004	Maize	cytosol	78.12	77.16
CDX71136	Canola	cytosol	74.38	77.02
CDX88683	Canola	cytosol	74.38	77.02
CDY32662	Canola	cytosol	75.0	76.92
Zm00001d036285_P001	Maize	cytosol, extracellular	77.81	76.85
EER89259	Sorghum	cytosol	77.5	76.54
CDY33013	Canola	cytosol	72.81	76.14
CDX80301	Canola	cytosol	72.81	76.14
CDY61002	Canola	cytosol	75.31	75.79
CDY24946	Canola	cytosol	75.0	75.47
CDY10577	Canola	cytosol	68.44	75.26
CDY20490	Canola	cytosol	73.75	75.16
CDY02866	Canola	cytosol	75.31	74.61
CDY40180	Canola	cytosol	73.12	73.82
CDX83308	Canola	cytosol	73.12	73.58
CDX86100	Canola	cytosol	70.0	73.2
CDY45437	Canola	cytosol	72.81	73.04
GSMUA_Achr7P10840_001	Banana	cytosol	72.81	72.81
CDX95749	Canola	cytosol	72.81	72.81
CDX86135	Canola	cytosol	55.31	69.69
CDX80617	Canola	cytosol	69.06	69.28
CDY60901	Canola	cytosol	71.25	68.88
CDY22350	Canola	cytosol	71.25	68.88
CDY18815	Canola	cytosol	68.44	68.87
CDY05182	Canola	cytosol	69.06	68.85
CDY27754	Canola	cytosol	69.06	68.85
CDY25019	Canola	cytosol	68.12	68.55
CDY05560	Canola	cytosol	67.81	68.24
CDY40717	Canola	cytosol	68.75	60.44
GSMUA_Achr4P31160_001	Banana	cytosol	81.56	60.28
CDX74139	Canola	cytosol	68.44	58.24
CDY38778	Canola	cytosol	42.19	44.12
CDY11632	Canola	cytosol	42.19	44.12
CDY52461	Canola	cytosol	41.88	43.79
CDY69521	Canola	cytosol	42.81	43.77
CDY55398	Canola	cytosol	42.81	43.77
CDY51518	Canola	cytosol	42.81	43.77
CDY30909	Canola	cytosol	41.56	43.46
CDY14840	Canola	cytosol	42.5	43.45
CDY47976	Canola	cytosol	42.5	43.45
CDY66916	Canola	cytosol	42.5	43.45
CDY45151	Canola	cytosol	41.25	43.14
CDY37977	Canola	cytosol	41.25	43.14
CDX93426	Canola	cytosol	41.25	43.14
CDY34892	Canola	cytosol	41.25	43.14
CDY07799	Canola	cytosol	41.25	43.14
CDX71949	Canola	cytosol	41.88	42.81
CDX88988	Canola	cytosol	41.88	42.81
CDY00569	Canola	cytosol	41.88	42.81
CDX98300	Canola	cytosol	41.88	42.81
CDY06035	Canola	cytosol	41.88	42.81
CDY46683	Canola	cytosol	40.62	42.62
CDX94291	Canola	cytosol	40.62	42.62
CDX92800	Canola	cytosol	40.62	42.62
CDX89309	Canola	cytosol	40.62	42.62
CDY24572	Canola	cytosol	38.75	40.92
CDY25366	Canola	cytosol	38.75	40.92
CDX67746	Canola	cytosol	25.94	40.89
CDY70204	Canola	cytosol	38.44	40.59
CDY33438	Canola	cytosol	38.12	40.26
CDX82268	Canola	cytosol	38.12	40.26
CDY69052	Canola	cytosol	38.75	39.49
CDY03595	Canola	cytosol	38.44	37.16
CDY36067	Canola	plasma membrane	38.44	16.76
CDX89311	Canola	cytosol, plastid	26.25	12.17

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.1.1	Gene3D:3.60.21.10	GO:A0A078DEJ4	EnsemblPlants:CDX86799
ProteinID:CDX86799	ProteinID:CDX86799.1	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00145536001	InterPro:IPR029052	InterPro:Metallo-depent_PP-like	PFAM:PF00149	PFAM:PF16891	PRINTS:PR00114
ScanProsite:PS00125	PANTHER:PTHR11668	PANTHER:PTHR11668:SF294	SMART:SM00156	SUPFAM:SSF56300	InterPro:STPPase_N
InterPro:Ser/Thr-sp_prot-phosphatase	UniParc:UPI0002546B17	SEG:seg	:	:	:

Description

BnaA09g21890D

Coordinates

chrLK031847:-:830159..831887

Molecular Weight (calculated)

36178.3 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.296

Length

320 amino acids

Sequence
(BLAST)

001: MDENLLDDII RRLLETNNGK QVKLLEAEIR QLCSASKEVF LSQPNLLELE APIKICGDVH GQFPDLLRLF EYGGYPPAAN YLFLGDYVDR GKQSIETICL
101: LLAYKLKYKL NFFLLRGNHE CASINRVYGF YDECKRRYNV RLWKSFTDCF NCLPVAALID DKILCMHGGL SPDLKTLDDI RRIPRPVDVP DQGVLCDLLW
201: ADPDKDIQGW GENDRGVSFT FGPDKVAEFL QTHDLDLVCR AHQVVEDGYE FFAKRQLVTI FSAPNYCGEF DNAGAMMSVD DSLTCSFQIL KSTEKKGGRF
301: GYSNNVHRPG TPPHKGGKGG

Best Arabidopsis Sequence Match ( AT4G11240.1 )
(BLAST)

001: MDETLLDDII RRLLATNNGR TVKQAQITET EIRQLCLASK EVFLSQPNLL ELEAPIKICG DVHGQFPDLL RLFEYGGYPP AANYLFLGDY VDRGKQSIET
101: ICLLLAYKVK YKFNFFLLRG NHECASINRV YGFYDECKRR YNVRLWKTFT ECFNCLPVSA LIDDKILCMH GGLSPDIKSL DDIRRIPRPI DVPDQGILCD
201: LLWADPDREI QGWGENDRGV SYTFGADKVA EFLQTHDLDL ICRAHQVVED GYEFFAKRQL VTIFSAPNYC GEFDNAGALM SVDDSLTCSF QILKASEKKG
301: RFGFNNNVPR PGTPPHKGGK GR

Arabidopsis Description

TOPP6Serine/threonine-protein phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178V1Q1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.