CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81376	Canola	cytosol	65.43	60.92
CDY31896	Canola	nucleus	96.3	46.43
CDX69038	Canola	plastid	90.12	35.44
CDY18334	Canola	cytosol	79.01	34.78
CDX72207	Canola	cytosol, mitochondrion, nucleus	22.22	19.15
CDY09785	Canola	nucleus, plastid	59.26	14.46
Bra008837.1-P	Field mustard	nucleus, plastid	65.43	13.73
CDX69649	Canola	nucleus, plastid	58.02	13.13
AT5G13310.1	Thale cress	nucleus, plastid	44.44	9.73
CDX81375	Canola	nucleus, plastid	1.23	1.56
CDX81207	Canola	nucleus, plastid	1.23	0.81

Protein Annotations

EnsemblPlants:CDY24187	EnsemblPlantsGene:GSBRNA2T00026276001	ProteinID:CDY24187	ProteinID:CDY24187.1	SEG:seg	UniParc:UPI0004EB1C49
UniProt:A0A078GGB1	MapMan:35.2	:	:	:	:

Description

BnaC01g37670DBnaC01g37670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGB1]

Coordinates

chrLK032155:+:83264..84146

Molecular Weight (calculated)

8889.5 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.772

Length

81 amino acids

Sequence
(BLAST)

1: MRLGVVSLRR RSGEAGVEAR AARFDEEDEY DKVALGKEDG GKGVSMEDAI SRPCGVRIRD PCANHAAAKM RLKEDELEAN K

Best Arabidopsis Sequence Match ( AT5G13310.1 )
(BLAST)

001: MASSGSADED FQSRVAKIFG SLPFSRPSSS KFSTSSSAPA SRQQSGSVWT LSDTEVEKRE WKRDSYDRDE IPCASSFDEL LKQQKPSEDD LKDIDCGEDF
101: DGVWSIRASM GLDRTLDDEA EEDEYDKVAL GEENDGEGCG RIRDPRANYV AARIRLKEDE IEANKFNTSA SQPSESKEPH AEESSEAMPR KPILKRKENS
201: SDSEARTSKR VRFDSVPEET LKKPEDTCSA SASSKIVSHQ GKSGARVPDY LLNPSSYTRY SFDPSCELDV ESPTGEYMDT PNAVEGLKNP ESESFPKVSF
301: IPQNKTKDVS EDSSNCNETK PIVAGELAEE ERPSATEDGD TEIRESESCT SFQSKGRQYR AKLSLDETDV

Arabidopsis Description

Uncharacterized protein At5g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LYU5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.