Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24187 | Canola | cytosol | 19.15 | 22.22 |
| CDX81376 | Canola | cytosol | 18.09 | 19.54 |
| CDX81207 | Canola | nucleus, plastid | 23.4 | 17.89 |
| CDY09785 | Canola | nucleus, plastid | 38.3 | 10.84 |
| CDY31896 | Canola | nucleus | 19.15 | 10.71 |
| CDX69649 | Canola | nucleus, plastid | 37.23 | 9.78 |
| Bra008837.1-P | Field mustard | nucleus, plastid | 39.36 | 9.59 |
| CDY18334 | Canola | cytosol | 18.09 | 9.24 |
| CDX69038 | Canola | plastid | 17.02 | 7.77 |
| AT5G13310.1 | Thale cress | nucleus, plastid | 26.6 | 6.76 |
| CDX81375 | Canola | nucleus, plastid | 1.06 | 1.56 |
Protein Annotations
| EnsemblPlants:CDX72207 | EnsemblPlantsGene:GSBRNA2T00156043001 | ProteinID:CDX72207 | ProteinID:CDX72207.1 | SEG:seg | UniParc:UPI0004EF378E |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g26670D
Coordinates
chrLK031795:+:2996261..2997105
Molecular Weight (calculated)
10592.2 Da
IEP (calculated)
4.270
GRAVY (calculated)
-1.138
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MPCASSFDEI MRQQRISSTD RKEGEASMGL DRTLDDEDEE DEYDKVALGK ENGGEDVSME DAISRPCGVR IRDPRANHAT AKMRLKEDEL EANK
001: MASSGSADED FQSRVAKIFG SLPFSRPSSS KFSTSSSAPA SRQQSGSVWT LSDTEVEKRE WKRDSYDRDE IPCASSFDEL LKQQKPSEDD LKDIDCGEDF
101: DGVWSIRASM GLDRTLDDEA EEDEYDKVAL GEENDGEGCG RIRDPRANYV AARIRLKEDE IEANKFNTSA SQPSESKEPH AEESSEAMPR KPILKRKENS
201: SDSEARTSKR VRFDSVPEET LKKPEDTCSA SASSKIVSHQ GKSGARVPDY LLNPSSYTRY SFDPSCELDV ESPTGEYMDT PNAVEGLKNP ESESFPKVSF
301: IPQNKTKDVS EDSSNCNETK PIVAGELAEE ERPSATEDGD TEIRESESCT SFQSKGRQYR AKLSLDETDV
101: DGVWSIRASM GLDRTLDDEA EEDEYDKVAL GEENDGEGCG RIRDPRANYV AARIRLKEDE IEANKFNTSA SQPSESKEPH AEESSEAMPR KPILKRKENS
201: SDSEARTSKR VRFDSVPEET LKKPEDTCSA SASSKIVSHQ GKSGARVPDY LLNPSSYTRY SFDPSCELDV ESPTGEYMDT PNAVEGLKNP ESESFPKVSF
301: IPQNKTKDVS EDSSNCNETK PIVAGELAEE ERPSATEDGD TEIRESESCT SFQSKGRQYR AKLSLDETDV
Arabidopsis Description
Uncharacterized protein At5g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LYU5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.