CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81207	Canola	nucleus, plastid	71.88	37.4
CDY09785	Canola	nucleus, plastid	67.19	12.95
CDX69038	Canola	plastid	40.62	12.62
CDX69649	Canola	nucleus, plastid	70.31	12.57
Bra008837.1-P	Field mustard	nucleus, plastid	70.31	11.66
AT5G13310.1	Thale cress	nucleus, plastid	57.81	10.0
CDY18334	Canola	cytosol	10.94	3.8
CDX81376	Canola	cytosol	3.12	2.3
CDY24187	Canola	cytosol	1.56	1.23
CDY31896	Canola	nucleus	3.12	1.19
CDX72207	Canola	cytosol, mitochondrion, nucleus	1.56	1.06

Protein Annotations

EnsemblPlants:CDX81375	EnsemblPlantsGene:GSBRNA2T00134945001	ProteinID:CDX81375	ProteinID:CDX81375.1	SEG:seg	UniParc:UPI0004EE340D
MapMan:35.2	:	:	:	:	:

Description

BnaC09g07860D

Coordinates

chrLK031824:+:1344272..1344548

Molecular Weight (calculated)

6753.6 Da

IEP (calculated)

4.844

GRAVY (calculated)

-0.559

Length

64 amino acids

Sequence
(BLAST)

1: MADEDFQSRV ERIFGALAFS HSTSSTTSTS SAPPLRQTQS GSVWSLSGAE VENRSGSESS SLRG

Best Arabidopsis Sequence Match ( AT5G13310.1 )
(BLAST)

001: MASSGSADED FQSRVAKIFG SLPFSRPSSS KFSTSSSAPA SRQQSGSVWT LSDTEVEKRE WKRDSYDRDE IPCASSFDEL LKQQKPSEDD LKDIDCGEDF
101: DGVWSIRASM GLDRTLDDEA EEDEYDKVAL GEENDGEGCG RIRDPRANYV AARIRLKEDE IEANKFNTSA SQPSESKEPH AEESSEAMPR KPILKRKENS
201: SDSEARTSKR VRFDSVPEET LKKPEDTCSA SASSKIVSHQ GKSGARVPDY LLNPSSYTRY SFDPSCELDV ESPTGEYMDT PNAVEGLKNP ESESFPKVSF
301: IPQNKTKDVS EDSSNCNETK PIVAGELAEE ERPSATEDGD TEIRESESCT SFQSKGRQYR AKLSLDETDV

Arabidopsis Description

Uncharacterized protein At5g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LYU5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.